Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02706 ATGATAATGGAAGCTACAATGAACTTCAATGAACAGTGTAGGATAGGGAAATCAGTGTACAAAGCTATAATAGACGGTCATGTTTTAGCTGTGAAAAATGTTAAGGAAGACATCACAGTAACTGAAGAGTTGATGATTCTTCCAAAGGTAAATCATGCAAATCTTGTAAAACTAATTGGTGTCTCTTCAGGATATGTTGGAAATCACTTTCTTGTATATGAATATGATGAAAATGGATCACTTTATAACTGGCTGTTCTCTGAATTTTCCACTGCTTCAAGCTCAGTGGCTTCCCTCACATGGAATCAGAGGTTAAGCATATCAATCGATGTTGCAATTGGTCTGCAATACATGCATGAACACATAGAACCAAGTATAGTCCATAGAGACATCACATCACATCAAGTAACATCCTTCTTGACTCAAACTTTAAGGCTAAGATATCAAGATTTTCAGTTGCAAGGAACTACAAAGAATCCTATGATAACAAAAGTAGATGTTTTCGCTTACGGGGTTGTTCTGTTAGAGTTATTAACAGGAGAGAAGTTTTTGTCGTATAGCGAAAACAGCAAAGTGAATATGTTATGGAAAGATATTAAGGGTGTGTTTGATATAGAAGAGAAGAGAGAGAAAAGGGTTAGAAGATGGATGGATCCTAAGTTGGGGAGACCAACTATGGGAGAAGTTGTTCTTAATTTTTCCCTTCTCACTCAACATTCTCCTACTTTGTTAGAGAGGTCTTGTATTTATGGATCAGATGTTGAGGTTATAGCTGGAACGGTTACTTCAATCATAGGTCGTTGA 804 0.3657 MIMEATMNFNEQCRIGKSVYKAIIDGHVLAVKNVKEDITVTEELMILPKVNHANLVKLIGVSSGYVGNHFLVYEYDENGSLYNWLFSEFSTASSSVASLTWNQRLSISIDVAIGLQYMHEHIEPSIVHRDITSHQVTSFLTQTLRLRYQDFQLQGTTKNPMITKVDVFAYGVVLLELLTGEKFLSYSENSKVNMLWKDIKGVFDIEEKREKRVRRWMDPKLGRPTMGEVVLNFSLLTQHSPTLLERSCIYGSDVEVIAGTVTSIIGR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02706 267 Gene3D Transferase(Phosphotransferase) domain 1 77 156 - -
Vifa5g02706 267 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02706 267 Pfam Protein tyrosine and serine/threonine kinase 31 155 IPR001245 GO:0004672|GO:0006468
Vifa5g02706 267 Gene3D Transferase(Phosphotransferase) domain 1 157 247 - -
Vifa5g02706 267 SUPERFAMILY Protein kinase-like (PK-like) 18 229 IPR011009 -
Vifa5g02706 267 Gene3D Phosphorylase Kinase; domain 1 1 75 - -
Vifa5g02706 267 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 2 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02706 Vifa-Chr5 902747211 902748090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02706 2 249 Receptor kinase-like Gene Family AT2G33580 33.808 9.57e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa5g02706 PK_Tyr_Ser-Thr 6.7e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02706 - - gmx:100301877 276.174