Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02705 ATGGACCAGGCTGAATTAACCACCGATCAGGTTCTGAGTAGAGACATTCCATGGGAGACCTACATGTCCACCAAGCTCATCTCTGGTACTAGCCTTCAGCTCTTGAGACGTTACGATCACCGATCGGAGAGTCAGAGAGCTCAGTTGCTCGATGATGATGGTCCCGCTTATGTTCGTGTGTTTGTTCATGTTTTGCGTGATATTTTCAAAGAGGATACAGTTGAGTATGTTTTGGCTCTGATAGATGAGATGCTGACAGCAAATCCGAAAAGAGCAAGACTGTTTCATGACAATGCCCTTGCGGATGATGATACTTATGAGCCTTTCCTAAGAAATTGGTTTGTACAAGAGAAAAGTTGTAAGATCCTTGCTTTAATAGTTAGTGTCAGGCCAAAAAATCAGAATGGCAGTGCTTCAAATGGAGGAGCATCAAGTGAAAAGAAATCAATTACCTCTATTGATGATGTTTTGATAGGATTGGTAAAATGGCTTTGTGAGCAGCTGAAGAAACCTTCTCATCCTACTCGTGGAGTTCCAACAGCTATCAATTGCCTATCAACTCTACTTAAGGAACCTGTTGTTAGGTCTTCCTTTGTTCAAGCTGATGGGGTCAAGTTGCTTGTGCCATTGATTTGTCCAGCATCCACTCAACAATCTATGCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTATCATATTATGAGCCTGCAATTGAATATTTGGCTACTTCAAGGACCCTTCCAAGACTTATTGATGTTGTTAAGAGTTCTACAAAAGAAAAGGTTGTTAGAGTTGTTGTCCTGACACTCAAAAACTTGATGTCGAAAGGGACATTGGGTGCTCAGATGGTTGATCTTCAGCTTCCTCAGGTTGTTCAAAGTTTGAAAGCACAAGCATGGAGTGATGAGGACTTGTTGGAGGCGCTGAATTCCCTTGAAGAAGGGCTTAAGGATAACATCAAGAAGCTTAGTTCTTTTGATAAGTACAAACAAGAAGTTCTCCTTGGCAATCTAGACTGGTCTCCCATGCACAAAGATCCCATATTTTGGCGAGAAAATATAACCAATTTTGAAGACCATGATTTCCAGATTCTAAGGGTCCTATTAACAATTTTGGACTCATCCAATGATCCAAGGACTCTAGCTGTTGCTTGCTTTGACATTTCACAGTTCATCCAGTGCCATCCGGCTGGGCGGATTATTGTGACAGACCTTAAAGCCAAGGAACGAGTGATGAAACTAATGAATCATGAGAGTGCTGAGGTTACTAAAAATGCACTTCTCTGCATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCAAGCTTCTTGCAGGTCTAG 1344 0.4174 MDQAELTTDQVLSRDIPWETYMSTKLISGTSLQLLRRYDHRSESQRAQLLDDDGPAYVRVFVHVLRDIFKEDTVEYVLALIDEMLTANPKRARLFHDNALADDDTYEPFLRNWFVQEKSCKILALIVSVRPKNQNGSASNGGASSEKKSITSIDDVLIGLVKWLCEQLKKPSHPTRGVPTAINCLSTLLKEPVVRSSFVQADGVKLLVPLICPASTQQSMQLLYETCLCIWLLSYYEPAIEYLATSRTLPRLIDVVKSSTKEKVVRVVVLTLKNLMSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLEEGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDPIFWRENITNFEDHDFQILRVLLTILDSSNDPRTLAVACFDISQFIQCHPAGRIIVTDLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02705 447 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 446 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vifa5g02705 447 Pfam V-ATPase subunit H 4 318 IPR004908 GO:0000221|GO:0046961|GO:1902600
Vifa5g02705 447 FunFam V-type proton ATPase subunit H 338 439 - -
Vifa5g02705 447 SUPERFAMILY ARM repeat 8 437 IPR016024 -
Vifa5g02705 447 Gene3D - 339 439 IPR038497 -
Vifa5g02705 447 Pfam V-ATPase subunit H 324 436 IPR011987 GO:0000221|GO:1902600
Vifa5g02705 447 Gene3D - 4 326 IPR011989 -
Vifa5g02705 447 SMART arm_5 397 437 IPR000225 GO:0005515
Vifa5g02705 447 SMART arm_5 190 235 IPR000225 GO:0005515
Vifa5g02705 447 SMART arm_5 236 277 IPR000225 GO:0005515
Vifa5g02705 447 PIRSF V-ATP_synth_H 1 446 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02705 1 446 Primary Pumps ATPases(2) AT3G42050 77.605 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02705 K02144 - gmx:100788723 800.431