Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02701 ATGGGTTTGAGAGACATAGGAGCTTCACTTCCTCCTGGTTTTCGTTTTTATCCAAGTGATCAAGAATTGGTTTGTCACTATCTTTACAAAAAGATCACAAATCAACAAATTCTTAACCATTCTTTGCTTGAAATTGATCTTCACATATGTGAACCATGGCAACTACCTGAGGTGGCAAAGCTTAATGCAAATGAATGGTACTTTTTTAGCTTTCGAGACCGTAAATATGCAACTGGATATAGAACAAACAGGGCAACTATATCTGGTTATTGGAAAGCAACTGGGAAAGATCGTGTTGTGTTGGATCCAATGAGTGAAGAAGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGGATTAAGACAGGATGGATTATGCATGAGTTTAGGTTGGAGACACCACACATGCCTCCTAAGGAGGACTGGGTATTGTGTAGAGTCTTTCACAAAAGCAAAGAAGACAACAATTCAAAACTGAACACACAAGAATTCATATATGAGACAACACCTCCATCCCTAACTTTGATGTCATCATCTCCAACAAATTACCAAACCATCCCTATTCCCTACAACAGAATTGATTCTTTTTCTTCCTCCATGACAACACTTCATCATTTAAATCCAAACCAAAACAATAATTCTTCCATCATCAATAATCTCCTTCAATATTCTCCTCAAGCAAATAATAAAAATAATAATAATAATAATAATAATAATAGTACTATTACTCAAATTAGTTCCAAATGTGATGATGAATATGGATTCTTGTGGAACATGGATTTGGAAGAAAATAGCTTAGAAGATGGTGTGGCTTCAAACATGGACGCAATAAGATTCGAGGTTGATAATACTAATAATAATAATAATGATAATATGGTTTTACTATAA 906 0.3477 MGLRDIGASLPPGFRFYPSDQELVCHYLYKKITNQQILNHSLLEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGYRTNRATISGYWKATGKDRVVLDPMSEEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEDNNSKLNTQEFIYETTPPSLTLMSSSPTNYQTIPIPYNRIDSFSSSMTTLHHLNPNQNNNSSIINNLLQYSPQANNKNNNNNNNNNSTITQISSKCDDEYGFLWNMDLEENSLEDGVASNMDAIRFEVDNTNNNNNDNMVLL 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02701 301 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vifa5g02701 301 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vifa5g02701 301 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 241 - -
Vifa5g02701 301 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vifa5g02701 301 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02701 Vifa-Chr5 899851224 899858876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02701 6 262 NAC Transcription Factor Family AT1G56010 43.123 1.40e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa5g02701 NAM 1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02701 - - tpra:123889826 463.766