Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02699 ATGAAATTACTTAACCAAGAAGTCTTCTCTCGCCCGTGCTCTCCTAGTGGCCATGAACATGACCTAACAATCCTTACTTGTAGAAAGTTGGTCTTTACAAGACGAAACCAAAGTAAAACAACAAAACTGAAACACTTCTTTCCACAGTCACACACAACTCAACTGGCCGGAAAACGTGCCAGTGTTCCTCGTCCGCCGCCAAAACCAGAAACCTACTCCGCCACGAGATTTTCTCCTCTTTCTACTTACTTCATCGAATTTCTCTCCGCCGCCATTTACAGCCGCGGTAGCCGCCTCTGCAACACGCTAGAGAATTGCGTCTCAGCAGATCAAATCCGAGCTCTACTCAAGGAGGACAAGGTTGAGAAAACCAGCAAGTCTGAACCGATTCCCACAAAGACTAAACCTGAGATGGATGACAATACTTCATATAGCCAGATTTATGCACATCGGCCGTGGATAGTATCGGACCAGAACAGATGCAAATCTGAGGAATCTTGCGCAGATCATCGTCCTATGGTTAATAATCCCCGTACAAACTCTTCTCGTCCAAAAGGAACCATATATGGATGTCCAAACTGCAGTAATTGTTTAAAGGTAACAGCAAGGTGGCATCCTGAGGATGCAAGAAAAGAAGTTCTGGAAGATGCTCCTATTTTCCTTCCAACAGAAGAGGAATTCAAAGATACACTTGGATATATCGCAAGCATACGTTCCCGAGCTGAACCTTATGGAATATGCCGTATTGTACCTCCTACGAGCTGGAAACTGTTGTGTACTCTTGAAAAAAAGAATGTATGGGAAAACTCTGAATTTGTTGCTCAAACTCAGCGAATTGATGGGCACCAAGTTCAGCATACACAAGAAAGTATGGCTAGCTCTCATGATACTACCGAAAGCAAGAGAAGGAAAGTGATTAAAGGAGAGATGGACTCTCATCTTGGTAATAGAAGCACTTGCACCTCAAATAATGGAAATGTTGAAGGCTGTGACGCCATACATCAACAGCAATGGGAGCCATCTGTTGAGAATATTGAGGGTGAGTACAGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTCTGTGGTAACACTTCAGAGGCTGGAGATTTTAGCAGTGGATTTCCAATTCCAACTGTTTCTGACCCTGAATATATGAAATCTGGATGGAACTTAAATAATATGCTTTCACTCCCAGGCTCTCTTCTTTCTTTTGAAAACCCTGAAGCTGCACATAAATTTTCCCCCAGGGTACATGTGGGAATGTGCTTTTCTCCACTTAAATGGAAAGTTGAAGAGCACCAATTGTACTCATTATGTTTCATGCATATGGGTGAACCCAAAGTATTGTATAGTGTCCCAGGAAGATCTGCTGATCAGTTTGAAACAGTTTGGAAGAAGCATCTCGGAGATATGAATGCAGGAAAACCTGATTTGCATGATGATCTGGCTATGCAGTTATCCTGCTCGGTATTGAAGGAAGAGGGTATACCGGTATATCGTTGTGTTCAGTATCCTCGTGAATTTGTTCTTGTCTTCCCTGGAGCATATCATTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGCAAGCTTTGCTCCTCTTGAGTGGCTGCCTCATGGACAGAATGTTGTAGAGCTATATTGTGAACAGAAGAGAAAGACATTAATTTCGTACGATAAGCTGTTACTGGGAGCAGCAAGGGAAGCTGTGAGGGTCCGCTGGGAAATTGATATACTTATGAAGAGCACGCCCGACAACTTAATGTGTAGAGATGCATATCAAAGAAATGGGATCTTAAAAGAAACTTTGAATTCTCGCATCAGTAGTGAGAATTTGAAGAGGAAATTTATTTCTACTTCTTTCAAATCAGAAAAAATGGATGAAAGCTTTGATGCCAGTTGTAAAAGGGAATGTAGCATATGTCTGCGTGATTTATTCCTGTCAGCTGTTGGTTGTTCGTGTTCAGATGACAAGTTTGTCTGTCTTGATCATGCAAGAAAGCTTTGTTCTTGTCCTTGGACAGACAAAATACACCTCTACCGTTACGAAATCAGTGAATTGGAGGTTCTTCATCAAGCTTTGCATGGGAAACTAAGTGCAGTCTATAAATGGGCCAAAGAAGATCTTGGTTTAACTGTGCGCTCGATGGCCTCCAAGAGATCAAAACAAACCCCAGAGAAAGTAATTGGTTCAGTAGGTTTATTGAAAGAACCTATATCGCAGTCGCCGGATCCATACAACAAGTGGAAACAGCTTAAATTGCCGACAACACCAATTGCTTTGGTGGGGAAACAGAGCGAAACGTCCTTCCAAGCCAAGCGGTCCCCTGGTAACGTTCTCAGTAATTCAAATGTCATTCATCCAAAAAACAACACAACTTTACTTCATTCAGCAACATCAAATGAGATCAAAGCTAAAGAGAAAATAGCGGGGCACAATTCTGCTGCAAAAAGCATTGGTGAAGGAAGTAATTCTGCTGCAAAAAGCATTGGTGAAGGAAGTAACTCTGCTGGAATGAAACCCGATAATAGCAATGCAATTGGTGATAAGCTCACAGTTTCAAAGAAAGTAGAAGAACCAAAAGCTTCTGAAGTTTCATCAACTCCAGACTCGGGTTTATTGTCTTTTCTACAAGACGGCATTTTCGATGAAGTTTCATCTGATAGTACAAGCTCTTCTAGTTCTTCAGAAACTAACTAG 2712 0.4185 MKLLNQEVFSRPCSPSGHEHDLTILTCRKLVFTRRNQSKTTKLKHFFPQSHTTQLAGKRASVPRPPPKPETYSATRFSPLSTYFIEFLSAAIYSRGSRLCNTLENCVSADQIRALLKEDKVEKTSKSEPIPTKTKPEMDDNTSYSQIYAHRPWIVSDQNRCKSEESCADHRPMVNNPRTNSSRPKGTIYGCPNCSNCLKVTARWHPEDARKEVLEDAPIFLPTEEEFKDTLGYIASIRSRAEPYGICRIVPPTSWKLLCTLEKKNVWENSEFVAQTQRIDGHQVQHTQESMASSHDTTESKRRKVIKGEMDSHLGNRSTCTSNNGNVEGCDAIHQQQWEPSVENIEGEYRRIVQNPTEEIEVLCGNTSEAGDFSSGFPIPTVSDPEYMKSGWNLNNMLSLPGSLLSFENPEAAHKFSPRVHVGMCFSPLKWKVEEHQLYSLCFMHMGEPKVLYSVPGRSADQFETVWKKHLGDMNAGKPDLHDDLAMQLSCSVLKEEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAASFAPLEWLPHGQNVVELYCEQKRKTLISYDKLLLGAAREAVRVRWEIDILMKSTPDNLMCRDAYQRNGILKETLNSRISSENLKRKFISTSFKSEKMDESFDASCKRECSICLRDLFLSAVGCSCSDDKFVCLDHARKLCSCPWTDKIHLYRYEISELEVLHQALHGKLSAVYKWAKEDLGLTVRSMASKRSKQTPEKVIGSVGLLKEPISQSPDPYNKWKQLKLPTTPIALVGKQSETSFQAKRSPGNVLSNSNVIHPKNNTTLLHSATSNEIKAKEKIAGHNSAAKSIGEGSNSAAKSIGEGSNSAGMKPDNSNAIGDKLTVSKKVEEPKASEVSSTPDSGLLSFLQDGIFDEVSSDSTSSSSSSETN 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02699 903 MobiDBLite consensus disorder prediction 770 794 - -
Vifa5g02699 903 Gene3D Cupin 202 536 - -
Vifa5g02699 903 PANTHER LYSINE-SPECIFIC DEMETHYLASE 212 797 - -
Vifa5g02699 903 SMART cupin_9 389 552 IPR003347 -
Vifa5g02699 903 MobiDBLite consensus disorder prediction 818 877 - -
Vifa5g02699 903 MobiDBLite consensus disorder prediction 279 294 - -
Vifa5g02699 903 ProSiteProfiles JmjC domain profile. 389 552 IPR003347 -
Vifa5g02699 903 MobiDBLite consensus disorder prediction 821 854 - -
Vifa5g02699 903 ProSiteProfiles JmjN domain profile. 217 258 IPR003349 -
Vifa5g02699 903 Pfam jmjN domain 218 251 IPR003349 -
Vifa5g02699 903 MobiDBLite consensus disorder prediction 279 302 - -
Vifa5g02699 903 SMART JmjN_1 216 257 IPR003349 -
Vifa5g02699 903 Pfam JmjC domain, hydroxylase 420 535 IPR003347 -
Vifa5g02699 903 MobiDBLite consensus disorder prediction 52 73 - -
Vifa5g02699 903 Pfam C5HC2 zinc finger 642 692 IPR004198 -
Vifa5g02699 903 SUPERFAMILY Clavaminate synthase-like 384 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02699 Vifa-Chr5 899491388 899497052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02699 152 764 JUMONJI Transcription Factor Family AT1G08620 44.962 6.64e-173 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa5g02699 JmjC 1.5e-30 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02699 K11446 - gmx:100804864 914.835