Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02696 ATGGATCTAGCTTCAGCGAAATGTGTAATCAACAGCATTTCTCGGTTCATTCATCTAGTTTCTTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCTGTTTTGAGGTGTTTGAAACCGGTGCTTGATGATGTTTTCGATTACAAAGTCCCTTTGGATGAGAATCTGTATAGAGAATGTGAAGAGTTGGACCGGCAGGTTAATGAAGCTCGGGAGTTTGTTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCATCATATGCAGGAACTTAAGTGTCTTAAGAAGGAATCCACATCTGTCTATATAGAAGAAGTGTTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAAGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAGTTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCTCTGAAGTCAAAAGTGATGTGTCAGTCCCATCATACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATACCAGAGACAGTCCATCCAGACTTGGCTTGATAACGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACAGTTAAAGCGATGATAGCAAGTTGGTGCGAAGAAAATCACGTCGAACTTCCCCATCACTCAAAGCAGAGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTGTTGCATCAAGATTTAAATCGGGTCTGTAGTTTCGGGTCTTCGCTTAGTAGCAATTCCAATTCAAAACCAACTCTTCAAACTGGAAATGCATTTGAAAAGCAAAAGGGTAATGACTTCTCTAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCCTTCATGTAGTCATAGCAGAACAAATGAAGAAGTTGCGAATTTCCCAACGGTATCACAAGACCAATTTCAAAGCCGTGGATCAAAAGCAACAATGCCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCTGTTGTCCGGCGAAATTAATAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAAGTTGGGAATTTTCCAACGGTATCACAAGAGCAATATCAAAGCCCTGTATCAAAAAATGCAAAGACGCCAGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTTAGGGGTATCAAATAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAACAGTGTCCGGGATATCAAATAAGCAACAAAATGTACAGAAGCAGGAAAGTGCACAGGAGAAGCATCCAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGACAGGGATATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAATAATAATGTGTTTCCTGCTTCTCCTGCAAATAAGGAAGTTAGGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAATTCCAATGACGCCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAAGAGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCAGGAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATATGCTTGTGTCCGGAGAAATTAATAATAATGTGTTTCCTGCTTTGCCCGCAAATAAAGAAGTTGAGAAGTTTCCAACGGTATCACGAGAGCAATTTCAAAGCCCTGGATCAGAAAATACAACGATACCAGGGATTTCAAATAAACATCAAAATATGCAAGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAACATCAAAATGTGCTTCTGTCTGGAGGAATTAATAATAACGTGTTCCCTGCTGGTCCTGCATATAAAGAATTTGGGAATTTTCCAAATGCATCACGAGAGCAGTTTCAAAGCCCTGAATCAAAATATCCAATGACAGAGAATGAAAATAAGTACAATAACAATAATAATATTGTTTTTGTTAGCCATTCAAGTTCAGAAGATGATGCCCATCCCGTTTCCAACTCAGAATCGGATAAATTGACCACCACTCATGTCGGTAAGTTGATTGAATATCTACAAAGTCAATCAAAAGAAACACAAGCTGCTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGCGCCATTGTGCATTTACTTCCATTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTGTCGATTAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCCGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTCTTAGGGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCGACAATCCCAGAGGGTCGAATAGAAATTGTACGCGAAAGGGCAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCATAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGTACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGAACGCCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAGTCAGCGTGAAGGAGCTAACGGTAGGGGAAAATCATGA 3423 0.395 MDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDRQVNEAREFVENWSPKTSRVHSVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQKEIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKVNQIVNLVCSLRDYAMKTKCSEVKSDVSVPSYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDNGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENHVELPHHSKQSNSTQSSPPKDYLLHQDLNRVCSFGSSLSSNSNSKPTLQTGNAFEKQKGNDFSRLSGEGETEMFEQQSQAPSCSHSRTNEEVANFPTVSQDQFQSRGSKATMPGISNKHQNVQEKHQNVPTVSGISNKHQNVLLSGEINNSVFPASPAYKEVGNFPTVSQEQYQSPVSKNAKTPEISNKHQNVQEKHQNVPTVLGVSNKQQNVQEKHQNVPTVSGISNKQQNVQKQESAQEKHPNVPTVSGISNKHQNVQEKHQNIPTVTGISNKQQNVLLSGEINNNVFPASPANKEVRNFPTVSQEQFQSPGSKIPMTPGISNKHQNVQEKHQNVPRVSGISNKHQNVQEKQENVQEKHQNIPTVSGISNKHQNMLVSGEINNNVFPALPANKEVEKFPTVSREQFQSPGSENTTIPGISNKHQNMQEKHQNVPTVSGISNKHQNVQEKHQNVPTVSGISNKHQNVLLSGGINNNVFPAGPAYKEFGNFPNASREQFQSPESKYPMTENENKYNNNNNIVFVSHSSSEDDAHPVSNSESDKLTTTHVGKLIEYLQSQSKETQAAAAEELRLLTKHNMENRIIVGKCGAIVHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERAIPLLVELVESGSHRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKAQQLLSHFRSQREGANGRGKS 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02696 1140 PANTHER U BOX DOMAIN-CONTAINING 31 1128 - -
Vifa5g02696 1140 MobiDBLite consensus disorder prediction 376 393 - -
Vifa5g02696 1140 MobiDBLite consensus disorder prediction 341 393 - -
Vifa5g02696 1140 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vifa5g02696 1140 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vifa5g02696 1140 Gene3D - 839 1135 IPR011989 -
Vifa5g02696 1140 SUPERFAMILY RING/U-box 234 312 - -
Vifa5g02696 1140 MobiDBLite consensus disorder prediction 524 558 - -
Vifa5g02696 1140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Vifa5g02696 1140 MobiDBLite consensus disorder prediction 341 365 - -
Vifa5g02696 1140 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vifa5g02696 1140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 977 1019 IPR000225 GO:0005515
Vifa5g02696 1140 SUPERFAMILY ARM repeat 855 1127 IPR016024 -
Vifa5g02696 1140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 895 937 IPR000225 GO:0005515
Vifa5g02696 1140 Coils Coil 184 211 - -
Vifa5g02696 1140 SMART arm_5 884 924 IPR000225 GO:0005515
Vifa5g02696 1140 SMART arm_5 1047 1087 IPR000225 GO:0005515
Vifa5g02696 1140 SMART arm_5 1007 1046 IPR000225 GO:0005515
Vifa5g02696 1140 SMART arm_5 925 965 IPR000225 GO:0005515
Vifa5g02696 1140 SMART arm_5 966 1006 IPR000225 GO:0005515
Vifa5g02696 1140 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vifa5g02696 1140 FunFam RING-type E3 ubiquitin transferase 840 1133 - -
Vifa5g02696 1140 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1018 1059 IPR000225 GO:0005515
Vifa5g02696 1140 Pfam Armadillo/beta-catenin-like repeat 886 923 IPR000225 GO:0005515
Vifa5g02696 1140 Pfam Armadillo/beta-catenin-like repeat 925 964 IPR000225 GO:0005515
Vifa5g02696 1140 Pfam Armadillo/beta-catenin-like repeat 968 1005 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02696 Vifa-Chr5 897130724 897136311 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02696 196 479 U-box Gene Family AT2G23140 30.769 1.68e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02696 - - psat:127126040 1019.22