Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02695 ATGGATCTAGCTTCAGCGAAATGTGTAATCAACAGCATTTCTCGGTTCATTCATCTAGTTTCTTGCCAAACAGTGAAGCCTATCCCTCTTCAGAAGAACTGTACTAATATGGTTTCTGTTTTGAGGTGTTTGAAACCGGTGCTTGATGATGTTTTCGATTACAAAGTCCCTTTGGATGAGAATCTGTATAGAGAATGTGAAGAGTTGGACCGGCAGGTTAATGAAGCTCGGGAGTTTGTTGAAAATTGGAGTCCGAAGACAAGCAGGGTTCATAGTGTTCTTCAAAGTGGAGAACTGTTAATAATGTTACAGGACACTGCACTTAGGATTTGTCACATAATTGATAGATTCCATAAGTTAACTTCATCTACCTCAGTTTTGAATAATCTTCAGCATCATATGCAGGAACTTAAGTGTCTTAAGAAGGAATCCACATCTGTCTATATAGAAGAAGTGTTGAGAAATCAAAAGGATAATACTAAGCCTAGCTATGAACGTCAAAAGGAAATTATAGAGTTACTTAATTTGACGTCAAACCAGGATCTACTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTTGAATGCGGAAGTTAACAAAACAAAAGGGGAGTTGGATAAAGTTAACCAAATTGTGAATCTTGTTTGCAGTTTACGTGATTATGCAATGAAAACTAAATGCTCTGAAGTCAAAAGTGATGTGTCAGTCCCATCATACTTCCGATGCCCTTTATCGCTTGAACTCATGTTGGATCCTGTTATTGTTGCTTCAGGTCAAACATACCAGAGACAGTCCATCCAGACTTGGCTTGATAACGGGCTGAATGTTTGTCCCAAGACTCATCAGACACTTAACCATGCAATTCTAATTCCCAATTATACAGTTAAAGCGATGATAGCAAGTTGGTGCGAAGAAAATCACGTCGAACTTCCCCATCACTCAAAGCAGAGTAATTCTACCCAAAGTTCACCCCCCAAAGATTATTTGTTGCATCAAGATTTAAATCGGGTCTGTAGTTTCGGGTCTTCGCTTAGTAGCAATTCCAATTCAAAACCAACTCTTCAAACTGGAAATGCATTTGAAAAGCAAAAGGGTAATGACTTCTCTAGATTAAGCGGTGAAGGTGAGACAGAAATGTTTGAGCAACAATCTCAGGCTCCTTCATGTAGTCATAGCAGAACAAATGAAGAAGTTGCGAATTTCCCAACGGTATCACAAGACCAATTTCAAAGCCGTGGATCAAAAGCAACAATGCCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCTGTTGTCCGGCGAAATTAATAATAGTGTGTTTCCTGCTTCTCCTGCATATAAAGAAGTTGGGAATTTTCCAACGGTATCACAAGAGCAATATCAAAGCCCTGTATCAAAAAATGCAAAGACGCCAGAGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTTAGGGGTATCAAATAAGCAACAAAATGTACAGGAGAAGCATCAAAATGTTCCAACAGTGTCCGGGATATCAAATAAGCAACAAAATGTACAGAAGCAGGAAAGTGCACAGGAGAAGCATCCAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGACAGGGATATCAAATAAGCAACAAAATGTGCTTCTGTCTGGAGAAATTAATAATAATGTGTTTCCTGCTTCTCCTGCAAATAAGGAAGTTAGGAATTTTCCAACGGTATCACAAGAGCAATTTCAAAGCCCTGGATCAAAAATTCCAATGACGCCAGGGATATCAAATAAACATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAAGAGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCAGGAAAATGTGCAGGAGAAGCATCAAAATATTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATATGCTTGTGTCCGGAGAAATTAATAATAATGTGTTTCCTGCTTTGCCCGCAAATAAAGAAGTTGAGAAGTTTCCAACGGTATCACGAGAGCAATTTCAAAGCCCTGGATCAGAAAATACAACGATACCAGGGATTTCAAATAAACATCAAAATATGCAAGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAGCATCAAAATGTGCAGGAGAAGCATCAAAATGTTCCAACGGTGTCAGGGATATCAAATAAACATCAAAATGTGCTTCTGTCTGGAGGAATTAATAATAACGTGTTCCCTGCTGGTCCTGCATATAAAGAATTTGGGAATTTTCCAAATGCATCACGAGAGCAGTTTCAAAGCCCTGAATCAAAATATCCAATGACAGAGAATGAAAATAAGTACAATAACAATAATAATATTGTTTTTGTTAGCCATTCAAGTTCAGAAGATGATGCCCATCCCGTTTCCAACTCAGAATCGGATAAATTGACCACCACTCATGTCGGTAAGTTGATTGAATATCTACAAAGTCAATCAAAAGAAACACAAGCTGCTGCTGCCGAAGAATTGCGGCTTCTTACGAAGCATAACATGGAAAACCGTATCATTGTTGGGAAATGTGGCGCCATTGTGCATTTACTTCCATTGCTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTATACTGAATTTGTCGATTAATGAAGACAACAAGACCTTGATTATGGAAGCAGGAGTCATAGAACCACTTATCCATGTTTTGAAGAATGGAAATAATGGTGCCAAGGAAAATTCGGCTGCAACTCTATTCAGCCTCTCAGTACCAGAAAACAATAAGATGAAGATTGGTCGCTCCGGTGCTGTTAAAGCTTTGGTGGAGCTTCTAGCTTCTGGAACTCTTAGGGGGAAGAAAGATGCTGCAACTGCTTTATTTAACCTATCAATATTTCACGAGAATAAAGCTCGGATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTTAAGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACTTATCGACAATCCCAGAGGGTCGAATAGAAATTGTACGCGAAAGGGCAATCCCCTTACTGGTTGAACTTGTGGAATCGGGTTCTCATAGGGGAAAGGAAAATGCTGCATCGATTGTCTTGCAACTTAGCCTTCATAGCCCTAAGTTTTGTACCCTCATTCTTCAAGAAGGAGCTGTACCTCCCATAGTTGCATTGTCCCAGTTTGGAACGCCAAGAGCAAAGGAAAAGGGACAGATCTGGATGCTCTAG 3378 0.3946 MDLASAKCVINSISRFIHLVSCQTVKPIPLQKNCTNMVSVLRCLKPVLDDVFDYKVPLDENLYRECEELDRQVNEAREFVENWSPKTSRVHSVLQSGELLIMLQDTALRICHIIDRFHKLTSSTSVLNNLQHHMQELKCLKKESTSVYIEEVLRNQKDNTKPSYERQKEIIELLNLTSNQDLLKESIAVEKERLNAEVNKTKGELDKVNQIVNLVCSLRDYAMKTKCSEVKSDVSVPSYFRCPLSLELMLDPVIVASGQTYQRQSIQTWLDNGLNVCPKTHQTLNHAILIPNYTVKAMIASWCEENHVELPHHSKQSNSTQSSPPKDYLLHQDLNRVCSFGSSLSSNSNSKPTLQTGNAFEKQKGNDFSRLSGEGETEMFEQQSQAPSCSHSRTNEEVANFPTVSQDQFQSRGSKATMPGISNKHQNVQEKHQNVPTVSGISNKHQNVLLSGEINNSVFPASPAYKEVGNFPTVSQEQYQSPVSKNAKTPEISNKHQNVQEKHQNVPTVLGVSNKQQNVQEKHQNVPTVSGISNKQQNVQKQESAQEKHPNVPTVSGISNKHQNVQEKHQNIPTVTGISNKQQNVLLSGEINNNVFPASPANKEVRNFPTVSQEQFQSPGSKIPMTPGISNKHQNVQEKHQNVPRVSGISNKHQNVQEKQENVQEKHQNIPTVSGISNKHQNMLVSGEINNNVFPALPANKEVEKFPTVSREQFQSPGSENTTIPGISNKHQNMQEKHQNVPTVSGISNKHQNVQEKHQNVPTVSGISNKHQNVLLSGGINNNVFPAGPAYKEFGNFPNASREQFQSPESKYPMTENENKYNNNNNIVFVSHSSSEDDAHPVSNSESDKLTTTHVGKLIEYLQSQSKETQAAAAEELRLLTKHNMENRIIVGKCGAIVHLLPLLYSDMKITQEHAVTAILNLSINEDNKTLIMEAGVIEPLIHVLKNGNNGAKENSAATLFSLSVPENNKMKIGRSGAVKALVELLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVKLLDPADGMVDKAVALLANLSTIPEGRIEIVRERAIPLLVELVESGSHRGKENAASIVLQLSLHSPKFCTLILQEGAVPPIVALSQFGTPRAKEKGQIWML 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02695 1125 MobiDBLite consensus disorder prediction 376 393 - -
Vifa5g02695 1125 MobiDBLite consensus disorder prediction 341 393 - -
Vifa5g02695 1125 Pfam Armadillo/beta-catenin-like repeat 886 923 IPR000225 GO:0005515
Vifa5g02695 1125 Pfam Armadillo/beta-catenin-like repeat 968 1005 IPR000225 GO:0005515
Vifa5g02695 1125 Pfam Armadillo/beta-catenin-like repeat 925 964 IPR000225 GO:0005515
Vifa5g02695 1125 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Vifa5g02695 1125 MobiDBLite consensus disorder prediction 524 558 - -
Vifa5g02695 1125 MobiDBLite consensus disorder prediction 341 365 - -
Vifa5g02695 1125 SUPERFAMILY RING/U-box 234 312 - -
Vifa5g02695 1125 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Vifa5g02695 1125 CDD RING-Ubox_PUB 237 289 IPR045210 -
Vifa5g02695 1125 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 977 1019 IPR000225 GO:0005515
Vifa5g02695 1125 SUPERFAMILY ARM repeat 855 1117 IPR016024 -
Vifa5g02695 1125 FunFam RING-type E3 ubiquitin transferase 840 1124 - -
Vifa5g02695 1125 Gene3D - 839 1119 IPR011989 -
Vifa5g02695 1125 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 895 937 IPR000225 GO:0005515
Vifa5g02695 1125 Coils Coil 184 211 - -
Vifa5g02695 1125 SMART arm_5 884 924 IPR000225 GO:0005515
Vifa5g02695 1125 SMART arm_5 1047 1087 IPR000225 GO:0005515
Vifa5g02695 1125 SMART arm_5 1007 1046 IPR000225 GO:0005515
Vifa5g02695 1125 SMART arm_5 925 965 IPR000225 GO:0005515
Vifa5g02695 1125 SMART arm_5 966 1006 IPR000225 GO:0005515
Vifa5g02695 1125 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Vifa5g02695 1125 PANTHER U BOX DOMAIN-CONTAINING 31 1120 - -
Vifa5g02695 1125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 310 IPR013083 -
Vifa5g02695 1125 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1018 1059 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02695 Vifa-Chr5 897130724 897135330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02695 196 479 U-box Gene Family AT2G23140 30.769 1.67e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02695 - - psat:127126040 1011.52