Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02681 ATGGGAAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAAGGACCATGGACTCCAGAAGAAGATAGAATCCTCATCAATCACATTAACACTTTTGGTCATTCCAATTGGCGTGCTCTTCCCAAACAAGCTGGTTTGTTGAGATGTGGAAAGAGTTGTAGATTGAGATGGGCAAATTATTTGAAACCGGATATCAAACGTGGTAATTTCACCAAAGAAGAAGAGGATGCAATTATCAATTTGCATCACACGTTGGGAAATAGATGGTCAGCTATAGCAGCAAGATTACCTGGCCGAACAGACAACGAGATCAAAAACGTATGGCACACACATTTGAAGAAGAGGCTGCCACAAAACCAACAACCCAACAATGAAATCTCAAAACAAAATAAAAAACAAGAACAAAATGATGATCAGAATAACAATAACGATGATGTTGATTCGGCTGAAAATAGTTTTGCATTGGATGATGATTTCTGGTCGGAAGTTTTGTCGTCTAATAAATCTAACAATGAGACAAATGGTGTTATGGACATTGGTGCTGATGATTATGAATTTCAAGTTGGTGATGAAGGTGTGTTTAGTTCTAGTTCATTGAGTTTATGCCAAGATAAGGATTTTTGGCATGATGTTTATTCGAGAGCTGAAGAAATAACTGAGTTATTAGACTTATGA 675 0.3763 MGRAPCCEKMGLKKGPWTPEEDRILINHINTFGHSNWRALPKQAGLLRCGKSCRLRWANYLKPDIKRGNFTKEEEDAIINLHHTLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNQQPNNEISKQNKKQEQNDDQNNNNDDVDSAENSFALDDDFWSEVLSSNKSNNETNGVMDIGADDYEFQVGDEGVFSSSSLSLCQDKDFWHDVYSRAEEITELLDL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02681 224 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa5g02681 224 SMART sant 66 114 IPR001005 -
Vifa5g02681 224 SMART sant 13 63 IPR001005 -
Vifa5g02681 224 CDD SANT 69 112 IPR001005 -
Vifa5g02681 224 Gene3D - 69 144 - -
Vifa5g02681 224 CDD SANT 16 61 IPR001005 -
Vifa5g02681 224 Gene3D - 11 67 - -
Vifa5g02681 224 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa5g02681 224 MobiDBLite consensus disorder prediction 113 129 - -
Vifa5g02681 224 FunFam MYB-related transcription factor 13 66 - -
Vifa5g02681 224 FunFam Transcription factor MYB15 68 142 - -
Vifa5g02681 224 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Vifa5g02681 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa5g02681 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa5g02681 224 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa5g02681 224 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa5g02681 224 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 176 - -
Vifa5g02681 224 MobiDBLite consensus disorder prediction 113 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02681 Vifa-Chr5 894224237 894225735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02681 1 224 MYB Transcription Factor Family AT2G31180 53.968 4.07e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa5g02681 Myb_DNA-binding 2.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02681 K09422 - gmx:100775603 281.952