Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02674 ATGGATTTTGATTCTCTTCTCTTTCAAAACCAAAACCAAAACCTTCTATACTTTCCTCAAAATTCCCACTTTAATAATTTCTCTTGGGAATTAGAAAATTTCGATAATTTCTTCATCGAAGACATCAACTTCAACAACCAATCACAAACACAAACACAAACACGATCAATATCTTCATCATTATCATCCGCCGAGTCCAACTCTTTGGTGTCCGTACTAAGCAATGAGTCTATAGAAGTCTCATCCAATACGACTTACACACAACTGATCAAAGAAACACAAACATCATCACCATCACCACTACCACTACCACCACCGCAGATTAAGGAAAGTAATAAAAGGACGTTTAGAGGAGTAAGAACAAGACCGTGGGGAAAATTCGCGGCTGAGATAAGAGATTCAACAAGAAAAGGTGTTAGAGTATGGATTGGAACGTTTGACACGGCCGAAGCGGCCGCGTTAGCTTATGATCAAGCAGCTTTTTCAACAAGAGGTTCATTGGCAGTGTTGAATTTTCCGGAAGAAGTTGTTAGAGAATCACTTAAAGAAATGAGTAGAAATTCTAAGCCTTTGGAAGAAGGTACTTCACCGGTATTAGCACTCAAGAGAAAACACATCATAAGGAAAAAGTCCAATAAGGTTAGTAAAAAGAAAATCAAAAGTGAACAACACATTCAGATTCAAAAAGAAACCAAAAATGCAAATGTTAATTCACAAAATGTCTTTGTGTTTGAGGATTTGGGTGCTGAATATCTGGAGCAACTATTGAGCTTGACTTCTTAG 783 0.3729 MDFDSLLFQNQNQNLLYFPQNSHFNNFSWELENFDNFFIEDINFNNQSQTQTQTRSISSSLSSAESNSLVSVLSNESIEVSSNTTYTQLIKETQTSSPSPLPLPPPQIKESNKRTFRGVRTRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLKEMSRNSKPLEEGTSPVLALKRKHIIRKKSNKVSKKKIKSEQHIQIQKETKNANVNSQNVFVFEDLGAEYLEQLLSLTS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02674 260 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700|GO:0006355
Vifa5g02674 260 CDD AP2 116 174 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 ProSiteProfiles AP2/ERF domain profile. 115 173 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 FunFam Ethylene-responsive transcription factor 2 114 174 - -
Vifa5g02674 260 SMART rav1_2 115 179 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 PANTHER DNA-BINDING DOMAIN 60 256 IPR044808 GO:0003700|GO:0009873
Vifa5g02674 260 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Vifa5g02674 260 MobiDBLite consensus disorder prediction 91 113 - -
Vifa5g02674 260 SUPERFAMILY DNA-binding domain 115 174 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02674 Vifa-Chr5 890173112 890173894 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02674 113 256 AP2-EREBP Transcription Factor Family AT2G31230 54.658 6.59e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vifa5g02674 AP2 2.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02674 K14516 - gmx:100779524 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02674 5 890173112 890173894 Vifa5g02674 5 890173112 890173894 ECH
Vifa5g02674 5 890173112 890173894 Vifa3g01309 3 336441741 336442454 PCT