Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02672 ATGGACGGAGAAGGAAACAACAACTCTGAGGTGAGATATAGAGGTATTCGAAGGAGACCATGGGGTAAGTTTGCAGCAGAAATTCGTGATCCAACAAGAAAAGGTTCTCGTGTTTGGCTTGGAACATTTGATACTGCTGAACAAGCTGCACGTGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCACAAAGCCATTCTCAACTTCCCAAATGACTTTGCTAATTCTACTACTAATTACTATATTCCAAACACTACTTCAACTTCAAATACTATATTGCCTAACTACTCTTCTTCTTCTTTTTCCTATCAAGAACAACAAGATGATGATATTCTAGATCAACTGGCTTGCTTGGACTACAAGTTGTTGGAAGAATTCCTTCATGGGCAAGATGACTTTGCAGCTGGTAGCTCTAGACATGAATAG 426 0.3967 MDGEGNNNSEVRYRGIRRRPWGKFAAEIRDPTRKGSRVWLGTFDTAEQAARAYDAAAFHFRGHKAILNFPNDFANSTTNYYIPNTTSTSNTILPNYSSSSFSYQEQQDDDILDQLACLDYKLLEEFLHGQDDFAAGSSRHE 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02672 141 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 SUPERFAMILY DNA-binding domain 12 71 IPR016177 GO:0003677
Vifa5g02672 141 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Vifa5g02672 141 CDD AP2 12 72 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 PANTHER DNA-BINDING DOMAIN 8 97 IPR044808 GO:0003700|GO:0009873
Vifa5g02672 141 Pfam AP2 domain 12 63 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Vifa5g02672 141 FunFam Ethylene-responsive transcription factor 2 11 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02672 Vifa-Chr5 888702454 888702879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02672 7 131 AP2-EREBP Transcription Factor Family AT3G23230 50.000 4.09e-36 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02672 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02672 - - gmx:100778998 152.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02672 5 888702454 888702879 Vifa5g02672 5 888702454 888702879 ECH
Vifa5g02672 5 888702454 888702879 Vifa3g01310 3 336947363 336947800 PCT