Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02671 ATGGACTTTTACGCTTCCGCAAATTTATTTGATATTTCATGGGAAGATTTGTTTTTCTTCGATAATATTGATTCCAATTCTTCATCCTCTAGCGGTGATCATATGGATTTACAAGAATTCAACTCCAATATCAAAGAAGAAAATTCACCACCACCAACCCAAACCCTAACTCAACACCAACCATCACTTCCCTCAAAAACTCTAACTCAAAAACAACCATCATGTAAACGAGAGAAGAGGCTTTATAGAGGAGTAAGGACACGACCATGGGGAAAATATGCAGCAGAGATAAGAGACACAACAAGAAACGGTGTTCGAGTATGGATTGGAACATTCGATACACCTGAAGCAGCTGCTTTGGCTTATGATCAAGCAGCTTTCTTAACAAGAGGTTATAGGGCAACCCTTAACTTCTCAGAACATGTTGTGAAGGAGTCTCTTCAAAACATGAACTTTAAGACATTGTTAAACAGGGGTTGTTCGCCTTTGTTGGAACTAAAAAAGATGCATGTCTTGAGAACAAGATCTACTAAGACTTGTAGTAAAAAGGGTAAAAAGGATTCAAAGAATGGAGGGTTGAATATTAATATCGCTGAAAATGTTTTGGTGTTGGAAGATATGGGGTCTGAGTATCTCGAGCAACTTTTGATGAGCACCATTTGA 663 0.3816 MDFYASANLFDISWEDLFFFDNIDSNSSSSSGDHMDLQEFNSNIKEENSPPPTQTLTQHQPSLPSKTLTQKQPSCKREKRLYRGVRTRPWGKYAAEIRDTTRNGVRVWIGTFDTPEAAALAYDQAAFLTRGYRATLNFSEHVVKESLQNMNFKTLLNRGCSPLLELKKMHVLRTRSTKTCSKKGKKDSKNGGLNINIAENVLVLEDMGSEYLEQLLMSTI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02671 220 CDD AP2 82 141 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 PANTHER DNA-BINDING DOMAIN 45 215 IPR044808 GO:0003700|GO:0009873
Vifa5g02671 220 FunFam Ethylene-responsive transcription factor 2 80 140 - -
Vifa5g02671 220 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Vifa5g02671 220 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 MobiDBLite consensus disorder prediction 43 77 - -
Vifa5g02671 220 Pfam AP2 domain 82 127 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Vifa5g02671 220 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Vifa5g02671 220 MobiDBLite consensus disorder prediction 43 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02671 Vifa-Chr5 888035983 888036645 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02671 65 219 AP2-EREBP Transcription Factor Family AT3G23240 50.323 5.32e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02671 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02671 K14516 - gmx:100784784 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02671 5 888035983 888036645 Vifa3g01549 3 403893967 403894599 ECH
Vifa5g02671 5 888035983 888036645 Vifa5g02671 5 888035983 888036645 ECH
Vifa5g02671 5 888035983 888036645 Vifa3g01314 3 337822459 337823136 PCT