Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02669 ATGGAAAATGCAATAAATAAAGGTGAATTACCGAAGCAAATAAAGTATAGAGGAGTAAGAATAAGGCCATGGGGAAAATTTGCAGCCGAGATTCGAGATTCGACTAGGCATGGTGCTCGAGTTTGGCTTGGCACATTCAACACGGCTACGGAAGCAGCAAGAGCTTATGATCGCGCTGCGTTCGATATGAGAGGTTCTTCGGCTATTCTCAACTTTCCTCACGAACATTTTCCATGCCATGTAGTCGATAATCCTTCTAAGCCATCTTGTTTACCCTCCTCCTCGAGTTCAACCTCATCATCATCATCTTCTTCAAAAGTTAAATCAAAAGATGGTGAACAAGTCATTGAGTTTGAGTATCTAGATGAAAAATTGTTAGAGGAACTCTTGGATCGTGAGAATAACATAAATCATAATTGGTTCAACTAG 429 0.4033 MENAINKGELPKQIKYRGVRIRPWGKFAAEIRDSTRHGARVWLGTFNTATEAARAYDRAAFDMRGSSAILNFPHEHFPCHVVDNPSKPSCLPSSSSSTSSSSSSSKVKSKDGEQVIEFEYLDEKLLEELLDRENNINHNWFN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02669 142 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Vifa5g02669 142 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Vifa5g02669 142 PANTHER DNA-BINDING DOMAIN 11 133 IPR044808 GO:0003700|GO:0009873
Vifa5g02669 142 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 MobiDBLite consensus disorder prediction 86 111 - -
Vifa5g02669 142 SUPERFAMILY DNA-binding domain 15 75 IPR016177 GO:0003677
Vifa5g02669 142 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Vifa5g02669 142 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02669 Vifa-Chr5 887832007 887832435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02669 12 133 AP2-EREBP Transcription Factor Family AT3G23230 63.115 6.46e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02669 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02669 - - cam:101512924 157.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02669 5 887832007 887832435 Vifa5g02669 5 887832007 887832435 ECH
Vifa3g01316 3 338191107 338191612 Vifa5g02669 5 887832007 887832435 PCT