Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02668 ATGTCACGATCTTCTTTGCCTATAGTTGCAATTGTTGTACTAAGCATCTTGGCCATTGTTTTCATATTCATTAGTTACTTGATTCTTGTGACCAAATGCTACTCAAACTGGTGGCATCCATTGAGATGGATATCAATCCTACCACCTTCACAGAATGAAGAGCCCTTCATGTCGTTCTCTCCGAGGACATGGAACCGTGGCGTAGACGAATCCGTCATCCAAGAAATCCCAACCTTTCAGTTCACGAAAGGAGAAGGCGGTGACGATCGTCGAAGTGTCAAAGGTTGTGTGGTTTGTTTGAATTGTTTCCAAGAACAAGATATGCTGAAAGTACTTCCAAATTGCAGCCACCACTTTCACTTGGATTGCATTAACATCTGGCTTCAAACAAATGCTAATTGTCCTCTTTGTAGAACAAGCATTTCAGGCAATGCGCAGTTTCCGACGAACCGTACCATAGCAGCACCGAGTTCTTCACCGCAGGATTCTCAGTTATTCTCTAACATGGGTAGTGATGAAGATTTTGTGGTGATTGAATTGTGGGGAGAAGGTGAGCATAGGGGAACAATGTCTCATATGCAGCAAGAAAGAAATGAGTCGAGGGAAAGCATAGCATCGTCGCTGAGTAGAACTCATTCTACAACTAGAAACATGGAGGAGGAGAAGGTGGTGGAGCTGAAACCATGGAAATGTCATGGTGTTTCCATCATGGGTGATGAGTGTATTGATGTTAGAAAAAAAGATGAACAGTTCTCTATTCAGCCTATTAGAAGATCTTTCTCATTGGATTCTGCGAGTGATAGAAAAGCTTACTTGGAAGTTCAAGACATTGTCAGACAGAATAATAGGCATCATCAAAATGAGGATTGTGACAGTAAAGATTGTAATAGTAGCAGAGGTAGAAGATCATTCTTTCCATTTCATCATGCTAGGGGATCAAAAACTCCATTGCTTCATTGA 960 0.4156 MSRSSLPIVAIVVLSILAIVFIFISYLILVTKCYSNWWHPLRWISILPPSQNEEPFMSFSPRTWNRGVDESVIQEIPTFQFTKGEGGDDRRSVKGCVVCLNCFQEQDMLKVLPNCSHHFHLDCINIWLQTNANCPLCRTSISGNAQFPTNRTIAAPSSSPQDSQLFSNMGSDEDFVVIELWGEGEHRGTMSHMQQERNESRESIASSLSRTHSTTRNMEEEKVVELKPWKCHGVSIMGDECIDVRKKDEQFSIQPIRRSFSLDSASDRKAYLEVQDIVRQNNRHHQNEDCDSKDCNSSRGRRSFFPFHHARGSKTPLLH 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02668 319 SMART ring_2 96 137 IPR001841 -
Vifa5g02668 319 Pfam Ring finger domain 96 138 IPR001841 -
Vifa5g02668 319 SUPERFAMILY RING/U-box 73 143 - -
Vifa5g02668 319 PANTHER RING-H2 FINGER PROTEIN ATL16 3 315 IPR044600 GO:0016567|GO:0016740
Vifa5g02668 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 143 IPR013083 -
Vifa5g02668 319 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Vifa5g02668 319 MobiDBLite consensus disorder prediction 194 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02668 Vifa-Chr5 887828821 887829780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02668 2 284 C3H Transcription Factor Family AT1G04360 43.522 7.78e-69 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02668 K19041 - psat:127126067 607.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02668 5 887828821 887829780 Vifa5g02668 5 887828821 887829780 ECH
Vifa3g01319 3 338804158 338805168 Vifa5g02668 5 887828821 887829780 PCT