Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02664 ATGGGTAGCAATTTACATCAGCTACTCAGAAGTCTTTGTTTCAATACTCATTGGAATTATGCTATATTTTGGAAACTCAAACATTGTCCTCCAAATCCAATGATCTTAACATTGGAGGATGCTTACTATGATAATTCGGATTATTTTGACTCTTCAGAAAATAAGTACTGTCAAAAGGCCTTGGAACAGATTAAGGGTGGGAAGTTTTCTGATGAAGCTTTGGGGTTAGCTGTGGCAAAGATGTCTTATAATGTATACACATTAGGGGAAGGTGTTGTTGGACAGGTAGCTGTTACTGGAAAAGATCGGTGGATTTGTGCAGATGATCAAGTTACAAGTTTGGGTTTGTCTTTTGAGTTTGATGATTTGTGGCAAACTCAGTTTTCTGCTGGAATTAGGACAATTGTTGTTGTGTCTGTAGTCCCACTTGGCGTTGTTCAGCTTGGTTCTCTAATAAAAGTGAATGAAGATATGGGGGTTATTAATCATATAAGAAATCTATTTTTGTCTACTCAAGATTACTCAATAGACCACATTCCGAGCCAAATACAACGTAGTTTGAAAAGCTCTTCATCTCAGCAGGGTATCTTGAAGGAAAAATCATCGTCAGATATTATGCCTGCTTGCATGACGAATGAAACAGTGGATGTTTTGATGCCCCTTCAATGTTCTGGGAGCAACAGTGCTACTAATTCTGCATATTGGGAAACGGGTGATGATGTGGTCAAGCTCGAAGGACCCGAGCTCAATAGTGTTTTGAGCCCCATTTTGCTTCGGTCAACGTTTGATATGATTAATGTAGAGCATCAGGAATTTGGAGAGATAGGACCTCTAAGTGCGAGGGAGTGTGCAGGGGGCAGTGATGGCTGCAAAATTATGAGATTGGAATCGGAACAAAATCTATCATCATTTTTGAACAATTCTGTTATAAATAATGACGGCGTCAGTGATTTGATACACCATTCTGAAAAGGCCAGAGTTGATTCTGCATGCTTTCCTACAGATTTTCTTGACACATATGTTTCTGAAAGTGACAAGTTCGGTAAACACAGCAAAAAGTCAGAATTTTGGACTGTGCCTTGTGGCCAGGATACCTCCTATACAGAGTTGAGTTTTCCGGCTGGCTGTGAACTACACGAAGCACTTGGACCAGCATCTTTGAAAGGGAGTAAATATTTTGATTCGCTGGCACAGGTTAATCAAGATGTGAAAGTTATGGATATGCCAGACACAGTTAACACTAGTCAATCGACTCCGGAGCATCTTTTGGAAGCAATGGTGGCCAACATTTGTCACAGTAGTAATAATGATGTTAATAGTGAATCATCATTTTATAGATCAAAGCAATCTGCAATAAGTTCTGGCAAAAAACCTGAAGTTTCTATTCAAAATGTGCATACTACTGTTAATCCAGAAAGCTATTCAATAGATCATCCTTGTCTTTTCAGAGAGGAAAAACACCATTGTTTGAGCTCATCGTCAGGGGTATGCGGTGTTATGTCATCTCAAGGCATTTCTTCTATATGTCCTAGTGCTTGTAGTGAACAACTCGAAAGGTCATCTGAACCATCTAAAAACATCAAAAAGAGGGCTAGACCTGGAGAAAGTTGCAGACCTCGGCCAAGAGACAGGCAACTGATCCAAGATCGAATTAAGGAGCTGAGAGATTTGGTTCCAAATGGTGCAAAGTGCAGTATTGATTCTCTACTGGAGCGCTCAATAAAGCACATGCTCTTTCTGCAAAGCATAACTAAGCATGCTGACAAGCTAACGAAGTTCGCTAATTCTAAATCAAAGATGCATCATTTGGAAGCAAACATTCTTGGATCCTCCAGTAATGAGCAGGGTTCAAGTTGGGCAATGGAGGTAGGGGGTCATCTAAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAACGGACAGATGCTTGTTGAGATGCTATGTGAAGAGTGGAGCTATTTTCTTGAAATAACGGAAGCCATAAGAAGCTTAGGCCTTACAATTTTGAAGGGTGCAACAAAAACTCGCGATGACAAGATGTTAATATGCTTTATTGTTGAGGTTGAAAACAACAAAAATGTACACCGATTGGACATCTTGTGGCCGCTTGTTCAGATATTGCAATCAAAGAGCACTGTAAAGCAACAGTAA 2154 0.3983 MGSNLHQLLRSLCFNTHWNYAIFWKLKHCPPNPMILTLEDAYYDNSDYFDSSENKYCQKALEQIKGGKFSDEALGLAVAKMSYNVYTLGEGVVGQVAVTGKDRWICADDQVTSLGLSFEFDDLWQTQFSAGIRTIVVVSVVPLGVVQLGSLIKVNEDMGVINHIRNLFLSTQDYSIDHIPSQIQRSLKSSSSQQGILKEKSSSDIMPACMTNETVDVLMPLQCSGSNSATNSAYWETGDDVVKLEGPELNSVLSPILLRSTFDMINVEHQEFGEIGPLSARECAGGSDGCKIMRLESEQNLSSFLNNSVINNDGVSDLIHHSEKARVDSACFPTDFLDTYVSESDKFGKHSKKSEFWTVPCGQDTSYTELSFPAGCELHEALGPASLKGSKYFDSLAQVNQDVKVMDMPDTVNTSQSTPEHLLEAMVANICHSSNNDVNSESSFYRSKQSAISSGKKPEVSIQNVHTTVNPESYSIDHPCLFREEKHHCLSSSSGVCGVMSSQGISSICPSACSEQLERSSEPSKNIKKRARPGESCRPRPRDRQLIQDRIKELRDLVPNGAKCSIDSLLERSIKHMLFLQSITKHADKLTKFANSKSKMHHLEANILGSSSNEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEEWSYFLEITEAIRSLGLTILKGATKTRDDKMLICFIVEVENNKNVHRLDILWPLVQILQSKSTVKQQ 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02664 717 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 714 IPR043561 GO:0003700|GO:0006355
Vifa5g02664 717 MobiDBLite consensus disorder prediction 519 545 - -
Vifa5g02664 717 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 168 IPR025610 -
Vifa5g02664 717 MobiDBLite consensus disorder prediction 521 545 - -
Vifa5g02664 717 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 531 580 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02664 Vifa-Chr5 886562172 886571423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02664 1 715 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 39.615 6.00e-150 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02664 - - mtr:25499239 999.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02664 5 886562172 886571423 Vifa5g02664 5 886562172 886571423 ECH
Vifa5g02664 5 886562172 886571423 Vifa3g01327 3 339501550 339505264 PCT