Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02660 ATGATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGAGAAGAAAATGTGTTAGAGGTTGTGTTTTTGCACCTTACTTTTGCCATGAACAAGGTGCTACTCATTTTGCTGCTATTCATAAGGTCTTTGGTGCAAGTAATGTTTCAAAACTTCTTGCACACCTCCCTGTGACTGATCGTTGTGAAGCTGCTCTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGATGTGTTTCTCATATTTTTGCACTTCAACAACAGGTGGTCAATTTACAAGCACAACTAGTTTATATGAGGGAACAAGCAGCTCAAAGGTGTCTCAATACTTCATTCTCTGAAAACCCTAATGAGAAAAACTTTGTAAAACCTAGTAATATTCTCCCTCAAGATCTTCAAAGTTGGTTCCAAATGGAAAATGATTTCAACATGAGTCCTCAATTTCTTCCCAACTTGTCCTCCTCCACTACTAATCTCTCAACAACAACACAATGCTATAATGGGAATGCTACCACTCTCATGGACCTAAACCCTATAATTGGAAACTATGAAAATTTAGGAACTTTAGAAGAAAGCATCTCATCATTTTCTAACTTTGAAGAGAGGTGTAATAACTCAATGTCCTGTAATGACATGCAAAGGCAGTGGACTTTTCATGAAATGAATAATTTTCAGTAA 696 0.3721 MMTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVTDRCEAALTISYEAQARLQDPIYGCVSHIFALQQQVVNLQAQLVYMREQAAQRCLNTSFSENPNEKNFVKPSNILPQDLQSWFQMENDFNMSPQFLPNLSSSTTNLSTTTQCYNGNATTLMDLNPIIGNYENLGTLEESISSFSNFEERCNNSMSCNDMQRQWTFHEMNNFQ 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02660 231 ProSiteProfiles LOB domain profile. 7 109 IPR004883 -
Vifa5g02660 231 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Vifa5g02660 231 PANTHER LOB DOMAIN CONTAINING PROTEIN 2 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02660 Vifa-Chr5 885298983 885300097 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02660 8 123 AS2 family AT3G58190 80.508 3.70e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g02660 LOB 2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02660 K13945 - gmx:100776678 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02660 5 885298983 885300097 Vifa5g02660 5 885298983 885300097 ECH
Vifa5g02660 5 885298983 885300097 Vifa3g01333 3 341375104 341375982 PCT