Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02658 ATGGCTTCTTCAAATGGAACCACCTCCGGAACCGGTTCTCCTTGTGGAGCATGCAAATTCCTAAGAAGAAAATGTGCACCTGATTGCATTTTTGCACCTTACTTTTGCTCAGAACAAGGTCCTGCAAGATTTGCAGCCATTCATAAAGTTTTTGGTGCCAGCAATGTTTCTAAGCTGCTTTTGCATATACCAGCTCATGAACGTTGTGAAGCTGTTGTCACTATCGCTTACGAGGCTCAAGCTCGTATTAGAGATCCTGTCTATGGCTGTGTCTCTCACATTTTTGCCTTACAGCAACAGGTAGCATGCTTGCAGACACAACTTATTCAAGTGAAATCTCAGCTGTCACAAAACATAGAGAATAGTAATAATAATAATAATAATAATCAATGGATAGGGAATAATAATAATAATGTTGTTGGCACACAACAAATGAATTATCATCCTTTTTGTCCAACTTACATGAACCCTCCTATATCTCCTCAAAGCTCACTTGAGTCATCAATCGATCATAGCGGAAGCATGAATGATGGAATGATGAACATGCAAGATGTACAAAGTAGTAGAGAGGATTTTTTGTTGCAAGTTTGTAATAGTTCTAAGAAAAGAATGTTGTATAACAATAATAATAGTCATGACTTGGGTGAGTTGCAAGAATTGGCTCTTAGGATGATGAGGAACTAA 684 0.3801 MASSNGTTSGTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHERCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQTQLIQVKSQLSQNIENSNNNNNNNQWIGNNNNNVVGTQQMNYHPFCPTYMNPPISPQSSLESSIDHSGSMNDGMMNMQDVQSSREDFLLQVCNSSKKRMLYNNNNSHDLGELQELALRMMRN 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02658 227 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Vifa5g02658 227 PANTHER LOB DOMAIN CONTAINING PROTEIN 10 219 - -
Vifa5g02658 227 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02658 Vifa-Chr5 884194663 884195838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02658 1 227 AS2 family AT2G42430 54.251 7.28e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa5g02658 LOB 4.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02658 K13944 - gmx:100801508 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02658 5 884194663 884195838 Vifa5g02658 5 884194663 884195838 ECH
Vifa5g02658 5 884194663 884195838 Vifa3g01335 3 341917499 341918444 PCT