Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02652 ATGTTAATGCGTTTGTTTCATCTCAACTCACCAGGGTCCATTACACAGCTGGAAACAAGATCAAATCGTGTAAGATTACTTGGTGCATATGTTGGTGTATTTTGGTACCAAATGGGCTGTACGTTAATCGATTTTTCATCCTTAAGAATTCACCCTATTTTGATTCATTGCAAACAAGGAAAGCATAGAACATGTTGCATAGTTGGTTGCTTCAGAAAGATGCAGAATTGGTGTTTGTCTTCTATGTTTGAGATGTCATTATTAAGACAATCAAAAATCAAGATGATTAATGTTGGCATAACTTATGCAACTTCTGAGAATACAGTTTCAACCCTTCCACCTACCGTCTCTAATGAAATGCCACCTCCTCACACTAAGAAGCGAAAGAATCATTCAGAGGCTTGGAATCCTTTCATTATATTTTCCATCCATGCTCATTTATCGAGATGCCTTGTTTACAAGAGACGAAGGATATCATCTTCTATGACAAGTGCTGAAGAACATGTTGGCTCTCCTTTAATTGTCAAGTTTGACCAAGAAGCTATTCTAAGAGCAATGGTTAAGATGTTCATTAACATGGAGATTCCTTTTCGGAAGGTTAAACATGAGTCTTTTCATGAATTTTTGAGTCTCGCTTCACCAAGATTTCAAATTTGTTCGCGCACAACATTAGCACGTGATGTCTTGAAACTATGGGACACATAA 705 0.3716 MLMRLFHLNSPGSITQLETRSNRVRLLGAYVGVFWYQMGCTLIDFSSLRIHPILIHCKQGKHRTCCIVGCFRKMQNWCLSSMFEMSLLRQSKIKMINVGITYATSENTVSTLPPTVSNEMPPPHTKKRKNHSEAWNPFIIFSIHAHLSRCLVYKRRRISSSMTSAEEHVGSPLIVKFDQEAILRAMVKMFINMEIPFRKVKHESFHEFLSLASPRFQICSRTTLARDVLKLWDT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02652 234 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 51 89 IPR029021 -
Vifa5g02652 234 Pfam Tyrosine phosphatase family 50 84 IPR004861 -
Vifa5g02652 234 Gene3D Protein tyrosine phosphatase superfamily 45 100 IPR029021 -
Vifa5g02652 234 PANTHER TYROSINE-PROTEIN PHOSPHATASE 49 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02652 Vifa-Chr5 882115057 882122260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02652 47 84 Protein tyrosine phosphatase (PTP) family AT3G02800 71.053 2.20e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02652 K18045 - psat:127078496 228.409