Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02651 ATGGCGAGTGGGAGGTTTTGTAAGGATGAAGAAGATAAGGCTATGTTGGAATCTGTATTGGGTACTGATGCTGTTGGATTTTTTAGTACAGCGGTTTCTAAACATGTTTTTTCTGATGTTATTGTTCCGCCGAATCTGGATTCGGGTATTCATAAAAGGTTGTGTCATATTGTTAAGGGTTCCAGGTGGAATTATGTGATTTTGTGGCAGGTTGCGGGTTTGAAATCGGGTGGGTATGTGTTGAAATATGGGGAGGGGCATTGTCAGGATCCGGTTGGGGGTCCGAGGAATGAGCAGGAAAGGGAGAGAGATGAAGTTAGGAGGAGGGTGTTGGGGAAAATTCATGCTTCGTGGGGTGGATCTAACTCGATTGAGAATGTTTATAAGAAGTTGGATGATGTTTCAGATTTGTATATGCTTTACTTGACTTCGGTTTATTATGTGTTTGGTTTTAATTCTCAGTATGGTCCTGGAAGTTCGTTTAAGTGTAGTAAACCGACTTGGTCTTCTGATGCTGGGAGTTGTTTAAAACAGTATGAATCGAGGTCGTTTCTGGCTAAATTGGCGGGTTTTCAAACTGTTGCTTTTGTGCCTCTCAAGGCTGGGGTTGTTGAGCTTGGTTCGATGGAGATGTTGCCTGAAGAGCAGGGTTTTTTGGATATGGTCAGGGCAACGTTTGGAGAAGCTACTTCTGGGCAGGCTAAGGTGGCACCGAAGATCTTTGGGCGTGAGTTAAGCTTAGGGGGAGATGCGAAGTCTCAGTCCATTACTATTAGTTTCTCCCCGAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTACGAAGTACAGGCGCTTGGACCGAATCATGCTTATGGTAATTCTTCGAATGGCGGTGTAGGAGACATTAATGAGGCAAAAATGTACCCTCAATTAGGTCAAATGGTTCCTGGGAATTTCACTTCTCAAGCAAGAGTTTCTTCTATAGATTTGGTTAATGAAGAGTCATCCTCGCCTCTTGGAGACGAGCGGAAGCCTAGAAAAAGAGGGAGAAAGCCTGCCAATGGACGAGAGGAACCGCTGAATCATGTTGAAGCAGAGAGGCAAAGACGAGAGAAGCTTAACCAGAGATTCTATGCTTTAAGAGCCGTTGTTCCTAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGTGATGCTATCACCCATATCACCGATCTCCAGAAGAAGATCAAGCTTTTGGAAACTGAGAAAAACATGGCTAAGGGCTCACAGTTGCCATTGCAAGATATTGATTTTCAGGCTAGACAGGACGATGCAGTTGTGAGAGTGAGTTGTCCCTTGGATATTCACCCGGTTTCTGGAATTGTTAAAGTGTTGAGAGAACATCAAATTGCAGCTCAAGAGGCAAATGTTTCAACTGCACAGGATAAGGTGATTCATACTTTCTCCATCAGAACTCAAGGAGGGGAAGCAGCTGCTATACAGTTGAAAGAAAAGCTTGAAGCATCTTTATCAAAAAATTAG 1509 0.4354 MASGRFCKDEEDKAMLESVLGTDAVGFFSTAVSKHVFSDVIVPPNLDSGIHKRLCHIVKGSRWNYVILWQVAGLKSGGYVLKYGEGHCQDPVGGPRNEQERERDEVRRRVLGKIHASWGGSNSIENVYKKLDDVSDLYMLYLTSVYYVFGFNSQYGPGSSFKCSKPTWSSDAGSCLKQYESRSFLAKLAGFQTVAFVPLKAGVVELGSMEMLPEEQGFLDMVRATFGEATSGQAKVAPKIFGRELSLGGDAKSQSITISFSPKVEDDSGFTSDSYEVQALGPNHAYGNSSNGGVGDINEAKMYPQLGQMVPGNFTSQARVSSIDLVNEESSSPLGDERKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIKLLETEKNMAKGSQLPLQDIDFQARQDDAVVRVSCPLDIHPVSGIVKVLREHQIAAQEANVSTAQDKVIHTFSIRTQGGEAAAIQLKEKLEASLSKN 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02651 502 Gene3D - 345 417 IPR036638 GO:0046983
Vifa5g02651 502 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 51 226 IPR025610 -
Vifa5g02651 502 MobiDBLite consensus disorder prediction 324 363 - -
Vifa5g02651 502 MobiDBLite consensus disorder prediction 331 363 - -
Vifa5g02651 502 FunFam Transcription factor bHLH13 345 419 - -
Vifa5g02651 502 PANTHER MYC 46 498 IPR045084 GO:0003700|GO:0006355
Vifa5g02651 502 Pfam Helix-loop-helix DNA-binding domain 356 402 IPR011598 GO:0046983
Vifa5g02651 502 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
Vifa5g02651 502 Coils Coil 398 418 - -
Vifa5g02651 502 CDD bHLH_AtAIB_like 349 426 - -
Vifa5g02651 502 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 352 401 IPR011598 GO:0046983
Vifa5g02651 502 SMART finulus 358 407 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02651 Vifa-Chr5 881626880 881628388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02651 5 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 48.317 3.46e-159 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02651 bHLH-MYC_N 9.2e-35 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02651 - - gmx:100819968 670.618