Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02646 ATGGCGTCTGAAGAGCCTACCACCGTCGCCGTTGAGCAGCCCATCGTGGAGGAGCCGGCCGCCGTCGACACTCTCCCACCCGTTGTCAATGAGTCCGAAGAGCCCGCTGCTAAGCCCAAGAAGGCTCCCAAAGAGCCCAAGGCCAAGAAAGCTCCTGCCAAACCCAAAACTCACCCCACCTATGAAGAGATGGTGAAGGAAGCGATTGTTGCTTTGAAAGAGAAGACCGGTTCGAGCCAGCACGCGATTGCGAAGTTCATTGAAGAGAAGCACAAGAACCTTCCCTCGAACTTCAAGAAGATTTTGCTGGTTCAGCTTAGGAAGCTTGTTGCTTCTGATAAGCTTGTTAAGGTGAAAGCTTCCTACAAGATACCGGCGAAGACCTCTGCTCCAAAGCCCGCCAAGAAGTCTGCTGCTTCCAAGCCCAAAGCCAAGCCCAAGGCTAAACCAGCTGCCAAGTCAAAGTCCAAGCCTGCTGCAAAAGCCAAGCCTGCTGCAAAGGCCAAGCCAGCTGCAAAAGCCAAGCCTGCTGCGAAAACCAAGCCAGCTGCTAAGGCAAAGCCTGCTGCCAAAACGAAACCTGCTGCCAAGCCTGTAGCCAAGCCAGCTGCAAAGGCTAAACCAGCTGCCAAGACCAAGCCAGCTGCAAAGGCTAAACCAGCTGCTAAGGCCAAGCCGGCTGCTAAGGCTAAGCCAGCTGCAAAGGCTGCAAGGACCTCGTCGAGGACTACACCAGGGAAAGCTGCTGCACCTAAACCAGCGGCGAAGAAGGCTGCACCTGTGAAGAAGACTCCAGTGAAAGCGGCGGCGAAGGCGAAGACTCCTGTGAAGAAGGCAGCGGCTAAGAAAGCCAAGAAGTGA 861 0.5505 MASEEPTTVAVEQPIVEEPAAVDTLPPVVNESEEPAAKPKKAPKEPKAKKAPAKPKTHPTYEEMVKEAIVALKEKTGSSQHAIAKFIEEKHKNLPSNFKKILLVQLRKLVASDKLVKVKASYKIPAKTSAPKPAKKSAASKPKAKPKAKPAAKSKSKPAAKAKPAAKAKPAAKAKPAAKTKPAAKAKPAAKTKPAAKPVAKPAAKAKPAAKTKPAAKAKPAAKAKPAAKAKPAAKAARTSSRTTPGKAAAPKPAAKKAAPVKKTPVKAAAKAKTPVKKAAAKKAKK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02646 286 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g02646 286 PANTHER HISTONE H1 34 275 - -
Vifa5g02646 286 SUPERFAMILY "Winged helix" DNA-binding domain 54 136 IPR036390 -
Vifa5g02646 286 Gene3D - 53 138 IPR036388 -
Vifa5g02646 286 MobiDBLite consensus disorder prediction 34 62 - -
Vifa5g02646 286 Pfam linker histone H1 and H5 family 58 119 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g02646 286 PRINTS Histone H5 signature 198 217 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa5g02646 286 PRINTS Histone H5 signature 145 159 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa5g02646 286 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa5g02646 286 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa5g02646 286 PRINTS Histone H5 signature 176 193 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa5g02646 286 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa5g02646 286 MobiDBLite consensus disorder prediction 1 62 - -
Vifa5g02646 286 MobiDBLite consensus disorder prediction 138 162 - -
Vifa5g02646 286 MobiDBLite consensus disorder prediction 121 286 - -
Vifa5g02646 286 CDD H15 57 127 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02646 Vifa-Chr5 880377549 880378498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02646 59 133 Single Myb Histone (SMH) Gene Family AT1G72740 41.772 1.10e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02646 K11275 - tpra:123889087 149.443