Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02643 ATGCCCCTTCATTCCCTCCCTATCCCGACGGATTCTCCTGCGCCGTCGTCCAAACCCTCATCTTCAAAAAACTCCCATTTCCGAGGCGTCCGGAAGCGTCCATGGGGCCGCTTCGCCGCCGAGATCCGTGATCCATGGAAAAAGACCCGCAAGTGGCTAGGCACTTTCGACACAGCAGAAGAAGCCGCCAGAGCCTACGACGACGCCGCCAGGGCCCTCCGTGGATCCAAAGCCAAGACCAACTTCTCTTACTTCGTCGCTCCTACAATTCTTCCAGTGCCTCCAACCTTCGACGGTGGTAATGGGAGACATGTCGCGTTTTGGAGTCCTCCGGTTTGTTTCACGGCGGGTGCTCCGGTGAGGTCGGAGTACAAAGGTTACAAGCTTGAGAATATTGTGGCGAGGAAGGAGAAGGAGGAGGAAAAGAAGAAGCCGTTTTTGTTTGACCTGAACTTGCCGGCACCGCTTGTTTGA 474 0.557 MPLHSLPIPTDSPAPSSKPSSSKNSHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGSKAKTNFSYFVAPTILPVPPTFDGGNGRHVAFWSPPVCFTAGAPVRSEYKGYKLENIVARKEKEEEKKKPFLFDLNLPAPLV 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02643 157 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Vifa5g02643 157 SUPERFAMILY DNA-binding domain 25 84 IPR016177 GO:0003677
Vifa5g02643 157 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 122 - -
Vifa5g02643 157 MobiDBLite consensus disorder prediction 1 32 - -
Vifa5g02643 157 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Vifa5g02643 157 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Vifa5g02643 157 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Vifa5g02643 157 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Vifa5g02643 157 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Vifa5g02643 157 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Vifa5g02643 157 CDD AP2 26 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02643 Vifa-Chr5 878728931 878729404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02643 23 82 AP2-EREBP Transcription Factor Family AT5G44210 86.667 7.08e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa5g02643 AP2 8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02643 K09286 - gmx:100816599 178.333