Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02615 ATGGAGGTTGTTGGCATGAAAAAGGAGAATATGAGATTTGAAGAAACTGAGCTGAGACTTGGAATTGGATCAGCCATAGTTTTTGAAGAAGTTGTAAGGAAGAGAGGATTTTCTGAGACTGAAACTGATCATCATGATGATGAGAAAACTACCATGGATTTGATGCTTAATCTTTCCTCTAAGGAAGCTGGTGCTGAGGTAGATCCAAATCATAAGAGCACCAAGACTTTGCCAAGGGACAAGACTCTTTTGCTTGCAGATCCCGCTAAGCCTCCTACAAAGATGCAAGTGGTAGGTTGGCCACCTGTGAGGTCATTTAGGAAGAACATATTAGCAACACAAAAGAGTGAAGAAAGTGGCAATCCAAATTCCATTGCAATAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTAGACTTGAAGATGTACAAAAATTACTCACAGCTATCAGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGAAACTGTGAATCTCAAGGAATGAAGGATTTTATGAATGAGAGTAAGTTGATGGATCTTCTAAATAACTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTTCCATGGGACGCTATTGGTATTGCACCGAGAGCTATGGAGAAATGCAAAAACAGGAGCTATGGAGAATAA 699 0.4092 MEVVGMKKENMRFEETELRLGIGSAIVFEEVVRKRGFSETETDHHDDEKTTMDLMLNLSSKEAGAEVDPNHKSTKTLPRDKTLLLADPAKPPTKMQVVGWPPVRSFRKNILATQKSEESGNPNSIAISFVKVSMDGAPYLRKVDLKMYKNYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWDAIGIAPRAMEKCKNRSYGE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02615 232 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Vifa5g02615 232 FunFam Auxin-responsive protein 122 226 - -
Vifa5g02615 232 Gene3D - 123 229 - -
Vifa5g02615 232 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 227 IPR003311 GO:0005634|GO:0006355
Vifa5g02615 232 Pfam AUX/IAA family 15 213 IPR033389 -
Vifa5g02615 232 SUPERFAMILY CAD & PB1 domains 129 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02615 Vifa-Chr5 873140648 873153946 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02615 128 213 B3 DNA Binding Superfamily AT3G61830 34.884 1.99e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa5g02615 AUX_IAA 1.7e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02615 K14484 - gmx:100810013 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02615 5 873140648 873153946 Vifa5g02615 5 873140648 873153946 ECH