Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02613 ATGGAGAGCTATATCGAAACAGATTTGATTGTTAATCACAAGGACACGGAGTTAAGGTTGGGATTACCTGGAAATGATGATGAACATTCATGCAATATTGGATCTATTGTTAGAAGCAACAAGAGATCTTTTTCACCGGAAACAAGTGTTGAAGAGTCTTCCGTTTGCAATGCTTCTAGTTCCTCAACCATAAGTGTTCAACAACCTTCAAAGGTACAAGTAGTTGGATGGCCACCAATTAGATCATTTAGGAAGAACAGATTACAACAGAAGAAAGATGAAGAAGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAATGTTTACAAAAGTTATTCAGAACTTCTCATAGCTTTGGAAAATTTGTTCAACTGCACATTTGGTGAATATTCAGAAAGAGAAGGGTATAAGGGATCTGAGCATGCACCTACTTATGAGGATAAGGATGGTGATTGGATGTTGGTTGGAGATGTTCCATGGAACATGTTCATATCCTCCTGCAAGAGGTTGAAGATAGTGAAAGGATCAGAGGCAAAGGGGTTGGAATGTTTATGA 585 0.3897 MESYIETDLIVNHKDTELRLGLPGNDDEHSCNIGSIVRSNKRSFSPETSVEESSVCNASSSSTISVQQPSKVQVVGWPPIRSFRKNRLQQKKDEEGSGMYVKVSMAGAPYLRKIDLNVYKSYSELLIALENLFNCTFGEYSEREGYKGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLECL 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02613 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 189 IPR003311 GO:0005634|GO:0006355
Vifa5g02613 194 ProSiteProfiles PB1 domain profile. 98 190 IPR000270 GO:0005515
Vifa5g02613 194 FunFam Auxin-responsive protein 93 194 - -
Vifa5g02613 194 Pfam AUX/IAA family 37 191 IPR033389 -
Vifa5g02613 194 SUPERFAMILY CAD & PB1 domains 92 182 - -
Vifa5g02613 194 Gene3D - 92 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02613 Vifa-Chr5 872007650 872008499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02613 86 191 B3 DNA Binding Superfamily AT2G46530 34.906 4.48e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa5g02613 AUX_IAA 2.5e-53 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02613 K14484 - gmx:100792134 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02613 5 872007650 872008499 Vifa5g02613 5 872007650 872008499 ECH