Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02612 ATGAAGAGCTTTATTGAAAGAGATTTGATTATTAATCACGAGGACACAGAGTTAAGGTTGGGATTACCTGGAAATAATGATGAACACTCATGCAATATTGGATCTATTGTTAGAAGCAACAAGAGATCTTTTTCACCGGAAACAAGTGTTGAAGAGTCTTCCATTTGCAATGCTTCTAGTCCCTCAACCACATGCGGTGTTCAACAACCTTCAAAGGTACAAGTAGTTGGATGGCCACCAATTAGATCGTTTAGGAAGAACAGTTTACAACAAAAGAAAGATGAAGAAGGAAGTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGAAAGATAGATCTCAAACTTTACAAAAACTATTCAGAACTTCTCATAGCTTTGGAAAATTTGTTCAACTGCACATTTGGTAAGAATCATTCAGGTGAACATGCTCCTACGTATGAGGACAAGGATGGTGATTGGATGCTGGTTGGAGACGTTCCATGGAACATGTTCGTATCCTCGTGCAAGAGGCTAAAGATAGTGAAAAGACCAGAGACAATGGGGTTGGCATGTTTACGGCCATTCAAATTAATTCAAGCTTGCTAG 597 0.397 MKSFIERDLIINHEDTELRLGLPGNNDEHSCNIGSIVRSNKRSFSPETSVEESSICNASSPSTTCGVQQPSKVQVVGWPPIRSFRKNSLQQKKDEEGSGMYVKVSMAGAPYLRKIDLKLYKNYSELLIALENLFNCTFGKNHSGEHAPTYEDKDGDWMLVGDVPWNMFVSSCKRLKIVKRPETMGLACLRPFKLIQAC 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02612 198 SUPERFAMILY CAD & PB1 domains 93 177 - -
Vifa5g02612 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 182 IPR003311 GO:0005634|GO:0006355
Vifa5g02612 198 Pfam AUX/IAA family 39 139 IPR033389 -
Vifa5g02612 198 Pfam AUX/IAA family 143 187 IPR033389 -
Vifa5g02612 198 Gene3D - 93 191 - -
Vifa5g02612 198 ProSiteProfiles PB1 domain profile. 99 182 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02612 Vifa-Chr5 871866856 871867632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02612 87 177 B3 DNA Binding Superfamily AT2G46530 36.264 1.68e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa5g02612 AUX_IAA 3.7e-27 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02612 K14484 - gmx:100792134 236.113