Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02611 ATGGCCAATAACCCTTCCGACGCTCCCGCCGCCGATGACTTCCTCGAACAAATCCTCAGCCTTCAGACCTTCGCTTCCGCCGACTCTGGATTGTCCGGGCCCGACATCTCTCTGACGGGAACCTCGCCGATGATGCTGCAGCTCAACTCCTCCGATGCTAACCACCGCCTCGCCGCAGGCGGTTCGTTTCATGCGCCGGTGTACCAGTTAGGGTTGAGCTTAGACCAAGGCAAAGGAGGAGGGTTTTTGAAGCCGGATGAAGCTTCTGGTAGCGGGGAACGCTTCCGCAACGACGTCGTTCATGGTAGACCTAATAATGTTTTTCATGGGCAACCCATGCATACAACTGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAGCGATTACGCAGGGAGAGAATAGCAGAAAGAATTAGGGCGCTACAAGATCTGGTTCCAAGTGTTAATAAGACAGATAGAGCTGCCATGTTGGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTCGATTGGGTGGAGCAGGTGCAGTGGCCCCACTGGTAACCGATATCCCATTATCATCAGTCGAGGAAGATGGCAGTGAGGGTGGAAGAAATCGGCCGGCTTGGGACAAGTGGTCAAATGATGGCACAGAAAAACAGGTCGCTAAGCTTATGGAAGAAAACGTTGGAGCTGCCATGCAATTGCTTCAATCAAAGGCGCTTTGCATCATGCCCATCTCACTGGCATCTGCGATATACCAGTCACAGCCACCGGACAGTTCTAGTATAGTCAAGCCTGAAACTAATCCACCTCCACAGACCTAG 885 0.5209 MANNPSDAPAADDFLEQILSLQTFASADSGLSGPDISLTGTSPMMLQLNSSDANHRLAAGGSFHAPVYQLGLSLDQGKGGGFLKPDEASGSGERFRNDVVHGRPNNVFHGQPMHTTVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEDGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPPQT 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02611 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 134 195 IPR036638 GO:0046983
Vifa5g02611 294 FunFam Basic helix-loop-helix transcription factor 131 193 - -
Vifa5g02611 294 Gene3D - 131 193 IPR036638 GO:0046983
Vifa5g02611 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 185 IPR011598 GO:0046983
Vifa5g02611 294 MobiDBLite consensus disorder prediction 108 140 - -
Vifa5g02611 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 271 - -
Vifa5g02611 294 SMART finulus 142 191 IPR011598 GO:0046983
Vifa5g02611 294 Pfam Helix-loop-helix DNA-binding domain 141 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02611 Vifa-Chr5 871518928 871521581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02611 63 291 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.298 2.19e-118 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa5g02611 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02611 - - gmx:100797789 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02611 5 871518928 871521581 Vifa5g02611 5 871518928 871521581 ECH