Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02609 ATGGAATCACACGGTGCCGGACCACTCCGTTCCCGGAGTTCCCAGTCCGCTTCTCCTTCCCACTCCGCCTCTGCCTCCGCCACCTCCTCCATCCGTAAACGCAAACTCGTATCCGAAGATCACGCGCCTCCGTTTCCTCCTTCTTCTTTATCCGCCGACACACGCGACGGCGCACTTACATCCAATGACGACCTAGAAAGCATTTCCGCCCGCGGCGCCGATTCTGATTCCGACGAGGACTCAGAGGATGCAGTTGTTGACGACGATGAAGACGAGTACGACAATGATAACGGTTCCTCCATGCGGAACTTCACCGCTTCCAGGCTCAACAATGCTCCCGCTGCTCCCCGCAATAGTAAGCTCAAAACTGAAAACTCCACTGTTAAGATCGAACAGTCCGATGGAACTAAAGACTCCGGACCTTCTGTTACCGGTGCTGCTCCCGGCGCCGGTTCTCTCCCCGGCATTGTGGTTAAGGAGGATGCAACGAAGATATTCACCGAAAATTTGCAGACCAGTGGTGCTTACAGTGCCAGGGAAGAGAGTCTCAAGAAAGAGGAAGAAACTGGAAAACTCAAATTTGCATGCCTTTCGAATGATGGTGTTGACGAGCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAGCTTCCCAATATGCCCAAGGAGTACATTGTTCGACTTGTTATGGATAGGAGCCATAAGTCTGTAATGGTTATAAGGCGTAATCACGTTGTTGGAGGCATTACATATCGTCCATATGCAAGTCAGAGGTTCGGTGAGATAGCCTTTTGTGCGATTACAGCCGATGAACAAGTAAAAGGATATGGGACCAGATTGATGAATCACTTAAAACAGTATGCACGTGATGTAGATGGGCTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGATTTACAAAAGAGATTCACTTGGAGAAAGATCGATGGCAAGGTTACATAAAGGATTACGATGGGGGAATTCTCATGGAATGTAAGATTGATCCAAAGCTTCCTTACACTGATTTATCAACTATGATCCGTCGTCAAAGACAGGCAATAGATGAGAAGATTAGAGAACTGTCAAACTGTCACATTGTTTATGCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATCCCTAAAAAAATTGTTGATGACATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCGCGGTTCAGAACTTTAGGGGGTTATACTGACAATGCTGCAAACCTAAAACATTTAACTGCATTTATGCGGTCACTTCTCAAGCAGTCGTTGCTTGATCACGCTGATGCTTGGCCATTCAAGGAACCTGTTGACCCACGGGATGTTCCTGATTACTATGAGATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAGTCAGAACAATATTACGTGACATTTGAAATGTTTGTTGAGGATGTGAGAAGAATGTTTGGGAATGCACGCACCTATAATTCTCCAGAAACCATATATTACAAATGTGCTACAAGGCTAGAAGCCCACTTTCAAAGCAAAGTGACATCCGTCCTCCAGTCTGGCACCAAGATTCAGTAG 1629 0.4567 MESHGAGPLRSRSSQSASPSHSASASATSSIRKRKLVSEDHAPPFPPSSLSADTRDGALTSNDDLESISARGADSDSDEDSEDAVVDDDEDEYDNDNGSSMRNFTASRLNNAPAAPRNSKLKTENSTVKIEQSDGTKDSGPSVTGAAPGAGSLPGIVVKEDATKIFTENLQTSGAYSAREESLKKEEETGKLKFACLSNDGVDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYASQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDVDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYAGIDFQKKEAGIPKKIVDDIPGLREAGWTPDQWGHSRFRTLGGYTDNAANLKHLTAFMRSLLKQSLLDHADAWPFKEPVDPRDVPDYYEIIKDPMDLKTMSKRVESEQYYVTFEMFVEDVRRMFGNARTYNSPETIYYKCATRLEAHFQSKVTSVLQSGTKIQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02609 542 PANTHER GH11602P 78 538 IPR037800 GO:0004402
Vifa5g02609 542 SMART bromo_6 426 536 IPR001487 GO:0005515
Vifa5g02609 542 CDD Bromo_gcn5_like 433 531 - -
Vifa5g02609 542 PRINTS Bromodomain signature 498 517 IPR001487 GO:0005515
Vifa5g02609 542 PRINTS Bromodomain signature 463 479 IPR001487 GO:0005515
Vifa5g02609 542 PRINTS Bromodomain signature 479 497 IPR001487 GO:0005515
Vifa5g02609 542 PRINTS Bromodomain signature 449 462 IPR001487 GO:0005515
Vifa5g02609 542 Gene3D - 422 541 IPR036427 GO:0005515
Vifa5g02609 542 SUPERFAMILY Bromodomain 428 534 IPR036427 GO:0005515
Vifa5g02609 542 ProSitePatterns Bromodomain signature. 451 509 IPR018359 -
Vifa5g02609 542 FunFam Histone acetyltransferase KAT2A 189 353 - -
Vifa5g02609 542 Pfam Bromodomain 444 521 IPR001487 GO:0005515
Vifa5g02609 542 MobiDBLite consensus disorder prediction 53 68 - -
Vifa5g02609 542 MobiDBLite consensus disorder prediction 1 154 - -
Vifa5g02609 542 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 204 351 IPR016181 -
Vifa5g02609 542 CDD NAT_SF 239 293 - -
Vifa5g02609 542 MobiDBLite consensus disorder prediction 8 32 - -
Vifa5g02609 542 Gene3D - 188 352 - -
Vifa5g02609 542 ProSiteProfiles Bromodomain profile. 446 517 IPR001487 GO:0005515
Vifa5g02609 542 MobiDBLite consensus disorder prediction 98 140 - -
Vifa5g02609 542 Pfam Acetyltransferase (GNAT) family 239 317 IPR000182 GO:0016747
Vifa5g02609 542 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 199 346 IPR000182 GO:0016747
Vifa5g02609 542 MobiDBLite consensus disorder prediction 76 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02609 Vifa-Chr5 870940505 870952765 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vifa5g02609 Bromodomain 8.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02609 K06062 - gmx:100813942 919.457