Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02603 ATGACAAGAGGAACAGGAGCAAAAGATCAAAAGCTTGAAAAACAGATGGGGTGCATGGCAGGTTTCCTACACATCTTCCATCGCCACCACTCATTTCCCGTTAAAAGACTCAATTCCTCAAAACCAACGGAACCGGAAACAAACGGTAGTAACTCACCAGCTGAATCAACACCAGAAACAGAAACAACAACTCAACCGGAAAAACCGACTCTTCAGATTCTTCCGGTTTTCGATTTCAAGGAAGGAACAAGATCTTCATGGAAACTCGCCAGAGAAGCTCCAAGACTATCGTTAGATAGCAGAGCCGTAATGGATGCAAAAGGAACAATTCATCCTAAAGATGATGAAAAACGACGACGTTCCACTAGCGTTGTTGCAAAGCTCATGGGTCTGGAAGACTCTGATCCCAACCCTAACCCTAACCCGAAGCTACAAAGATCAGCTTCGGAATCAACGGTTCACAGAGATCTATCACATTCTCAACAGTATCGTTTCTTTGACACTACGAATTTCCAATTAAAGCAAATCGACACAGACTCAGATCTAACTGAGAAAACAGAATCAGTCAGAGGAAAGGTAACGAAACAAAAGAAGTGTTTCTATGATTCTGCAGACTTTTTCCCTGGTCCGAAACAGAGTGTTTCTGTCTCTGTTCAAGGTGAGATTGAGAAACGGTTGAAGATGCGTGGGATTCATGAACCTTCTAAAGATCTCGAGACGCTGAAACAAATACTTGAAGCATTGCAGCTGAAAGGGCTTTTACATTCTAAGAAATTAACAAATCATAGAAACTTCGTCATCGAGAATGTGAACGAGAACGATTCGCCTATAGTTCTTATGAAGCCAGGAAAATCAATTCATCGAACCGGAACCGGGAATGATTCTCCACCACCAGCCTCCACTTTCCGGTCCAAACCAAAGGCTCCAACTGATCATATTCAACCTAATGTTAGAAACAGAAACACCGCGAACTCCCCCACGCGCAGTCCTAACTGCGTGAGGAAGGTTACCGGCGTGGAGACACAGCGAAAAGTGAACGACGCTCTTGATCGCCGAACAGTTTCTCCGGTTCGATCCCCGAAGACTGAACCGAACTGGCAATCGCCGATTCGGTCGCCGAGGATGAGAAAAGTTAGTACAACTTACCAAAAGGAAGAGAAAACCATGACAGAAGATGAAGCATCCATTGTTTCCGACAGTAGTTTCAGTAACTCTTCACATACAGACACCGAGAGGCTAATTAAGGTGGTGGACCAATACAGAGAAGGGAAAGAGCTACTGCAGAGGTGTGATAAATTACTCAACAGTATAGCGGAAATAACTGAGTCACAACAACCGAGTCCCGTATCGGTTCTCGACTCGTCGTTTTACAAAGACGGCTCGTCTAGTTCACCATCTCCAATAATGAAAAAATGCATTGAATATAAAGATGTAGAAGCGGAGTCAGAAGAAGATGCTTGGAGTACAGCTTTGTGTTCAAGCGAAACCAAGTCAGAGGATTCCGAATTCGTATATGTATCAGAAGTACTTCGTGCTTCTAACTACTTGCCCAAAGACAAAGACAATGACATGTTTCTGATACTGGAACAGCAACAGTACCTCAAGGGAAACAACAACACTTCCAAAGTTTCCACTCTTCAAAGAAAGTTAATCTTTGACACGATTCATGAGATTCTCAACTGTAAACGCCGTTTGCCACCGTGGAAGTTAGAGAACACGCCGTCGTTGGTTCAAATCTGGTCGGAGTTTCGGAGAATCCGAGAGAGGGAAGAGTCTGAGGATATGTTTGAGGTGATATGTGGAGTGTTGAAGAAGGACATGAATGGAGAAAATGAATGGAGTGAATGCCACGTGGAAATTGGAGATGTAGTGTTGGACATCGAACGGTTCATATTCAAAGATCTTATATGCGAAACCATTGGAGATTTAGCATTGTGTAGAGGAGTACCACGTAACAAAGTTTCGGTGCTTCGCAGGAAGTTAGAGTTTTATAATTAG 1998 0.4344 MTRGTGAKDQKLEKQMGCMAGFLHIFHRHHSFPVKRLNSSKPTEPETNGSNSPAESTPETETTTQPEKPTLQILPVFDFKEGTRSSWKLAREAPRLSLDSRAVMDAKGTIHPKDDEKRRRSTSVVAKLMGLEDSDPNPNPNPKLQRSASESTVHRDLSHSQQYRFFDTTNFQLKQIDTDSDLTEKTESVRGKVTKQKKCFYDSADFFPGPKQSVSVSVQGEIEKRLKMRGIHEPSKDLETLKQILEALQLKGLLHSKKLTNHRNFVIENVNENDSPIVLMKPGKSIHRTGTGNDSPPPASTFRSKPKAPTDHIQPNVRNRNTANSPTRSPNCVRKVTGVETQRKVNDALDRRTVSPVRSPKTEPNWQSPIRSPRMRKVSTTYQKEEKTMTEDEASIVSDSSFSNSSHTDTERLIKVVDQYREGKELLQRCDKLLNSIAEITESQQPSPVSVLDSSFYKDGSSSSPSPIMKKCIEYKDVEAESEEDAWSTALCSSETKSEDSEFVYVSEVLRASNYLPKDKDNDMFLILEQQQYLKGNNNTSKVSTLQRKLIFDTIHEILNCKRRLPPWKLENTPSLVQIWSEFRRIREREESEDMFEVICGVLKKDMNGENEWSECHVEIGDVVLDIERFIFKDLICETIGDLALCRGVPRNKVSVLRRKLEFYN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02603 665 MobiDBLite consensus disorder prediction 314 336 - -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 36 70 - -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 340 357 - -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 281 405 - -
Vifa5g02603 665 Pfam Domain of unknown function (DUF4378) 502 638 IPR025486 -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 358 377 - -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 33 76 - -
Vifa5g02603 665 PANTHER LONGIFOLIA PROTEIN 74 661 IPR033334 GO:0051513
Vifa5g02603 665 MobiDBLite consensus disorder prediction 129 155 - -
Vifa5g02603 665 MobiDBLite consensus disorder prediction 378 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02603 Vifa-Chr5 868551929 868554792 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02603 87 663 TRM (TON1 Recruiting Motif) Superfamily AT3G63430 37.037 5.16e-93 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02603 - - lja:Lj1g3v4449210.1 642.499