Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02600 ATGAGTCTGGAAAAGAATCCCTGTGTGTTTTTCGATGTATCGATTGATGGAGATCCGGTTGAAAGAATTGTTATTGAGCTTTTTTCTAGCATAGTTCCCAAGACAGCCGAGAATTTCCGGGCCCTGTGTACAGGTGAGAAGGGAATTGGAGAATCGACTGGGGAACCTTTGCATTATAAAGGAACATGTTTTCATCGTATAATTAAAGGTTTCATGGCTCAAGGTGGTGATTTTTCAAGGGGCAATGGTACTGGTGGAGAAAGTATATATGGAGGAAAATTTGCGGATGAAAATTTCAAACTTAAACATGATGGACCTGGCGTTCTGTCTATGGCTAATAGTGGTCCTAACACCAATGGATCTCAGTTTTTTATTATATTCAAGCGCCATCCTCATCTTGATGGAAAGCATGTTGTTTTTGGAAAAGTTACCAAAGGAATAGAGATTCTGAAAAAAATGGAGCAGTTGGGGACGTCAGATGGGAAACCTACCAAGCCAATTAAAATTGTTGATTGTGGTGAAGTCTCTAAAGCAAAAGGCCAGCATGCGGTTGAGAAGGAGAAAGGGAAAAGGAGAAAGTCAGTGAAATCCTTAACATCTGATGATAGCTCTGATGCTGACAAAAAAATAAGTAGAAAAAGAAAAATATCTTCCAAAGACAGGAGGAAAAGAAGGAGGAGATACTCATCATCTGATAGTGACAGTGATAGTTATTCAGATTCCGAATCAGATTCATCTTCAGATTCCGAATCAGATTCAGATTCACCGGCTTCTGATTCAAGTTCTTCTACCTATGGGAAACACCAGAAGAGGAAGAGAAATAAACGCAGGCATGGGAAGAAGAGAAGTATTGGGCGGAAACAGAAAAGAAGCCAGCACAGTCGTAGAAGATCAAAACACAAGTCGAAAAGGAGTTCTGACAGTTCAAGTGATAATGAAAGTGACAGTTCTAGTGCTAGTGACAGTAGTTCTGGTGATAGGAAAGCCGATCGCCGTGTTTCTGGTCGTAAAATACAAGCCGTCAAAGCTAAAAATAATCAAGACATAGGAAAGCCATCTTCTAGCCTTCCCTTACAAAGTCAAACCATTCCAGAACTAGTGGTGGACTCCAAAGTTAGAACTTCTGTGGACAAGCAGTTGCACGAGGAAGGTGAATTGTCTCCAGAAAATGGTGAATTTCTGAATAACGGGCATGATACTCAAGCTGAATTTACTAAACCTGCTAATCATCGGGCTTATTCAAATGATTCAAATCACAATAGAGATGTGAGTCCTGGAAGAAGCCCTGCCAAGAATTCTAGGGAGCTGAGCCAAGGACGTGCTCTATCGGCTAGCCCTGATAAAAAATCATCTGAACCTGCTGCAGCTGCCTCCAAACATGTCTATCGCATTTCAAAAAGCCCTTCTCCAAATGGTAAGCGTGTTAAAAAAGGACGAGGCTTTACTGAGCGCTATGCCTTTGTACGCAGATATCGTACTCCATCTCCAGAGCGGTCTCCCCGGCCATATCGTTATGGGGATAGAAATGTTAGAAGGAACTTTGATAGAAATACAAGCTACAGAAGCTATTCTGAGCGCTCACCACCACGACGTTTTCGAAGCCCACCAAGGGGACACCGTCCCAGATATCAAAGCAGAAGAAGTCAGAGCAGGAGCATCTCCCGCAGTCCAGTACGAGGCCGTTATAGAGACAATGGTCGTGGCCGGAGTCCAAAACGCAGTGTTAGCCCGGAAGACAAGCGACCTCCCATAAGTGACAGATTAAAATCTCGACTTGGTGCACAAGGTAATCAACGATCTCCAGACAGACAGAGGTCAAAGTCAAATTCGAAGAGCAATGGCATTTCTCGATCCAGATCCCCCGACGTTACACCCCCAAAGCGTTATAATAAAAGGACTTCCATATCTCGTAGCAGGTCTAGATCAAGTTCTGCATCAGGACAGAAGGGTTTGGTTTCCTATGGAGATGCTAGTCCTGATTCTGGAGCTAGGTAG 1995 0.4331 MSLEKNPCVFFDVSIDGDPVERIVIELFSSIVPKTAENFRALCTGEKGIGESTGEPLHYKGTCFHRIIKGFMAQGGDFSRGNGTGGESIYGGKFADENFKLKHDGPGVLSMANSGPNTNGSQFFIIFKRHPHLDGKHVVFGKVTKGIEILKKMEQLGTSDGKPTKPIKIVDCGEVSKAKGQHAVEKEKGKRRKSVKSLTSDDSSDADKKISRKRKISSKDRRKRRRRYSSSDSDSDSYSDSESDSSSDSESDSDSPASDSSSSTYGKHQKRKRNKRRHGKKRSIGRKQKRSQHSRRRSKHKSKRSSDSSSDNESDSSSASDSSSGDRKADRRVSGRKIQAVKAKNNQDIGKPSSSLPLQSQTIPELVVDSKVRTSVDKQLHEEGELSPENGEFLNNGHDTQAEFTKPANHRAYSNDSNHNRDVSPGRSPAKNSRELSQGRALSASPDKKSSEPAAAASKHVYRISKSPSPNGKRVKKGRGFTERYAFVRRYRTPSPERSPRPYRYGDRNVRRNFDRNTSYRSYSERSPPRRFRSPPRGHRPRYQSRRSQSRSISRSPVRGRYRDNGRGRSPKRSVSPEDKRPPISDRLKSRLGAQGNQRSPDRQRSKSNSKSNGISRSRSPDVTPPKRYNKRTSISRSRSRSSSASGQKGLVSYGDASPDSGAR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02600 664 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 182 - -
Vifa5g02600 664 CDD cyclophilin_ABH_like 7 173 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 250 264 - -
Vifa5g02600 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 MobiDBLite consensus disorder prediction 393 445 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 557 587 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 176 664 - -
Vifa5g02600 664 SUPERFAMILY Cyclophilin-like 4 175 IPR029000 -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 627 651 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 178 213 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 591 620 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 346 368 - -
Vifa5g02600 664 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 17 173 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Vifa5g02600 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 175 - -
Vifa5g02600 664 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Vifa5g02600 664 MobiDBLite consensus disorder prediction 476 519 - -
Vifa5g02600 664 Gene3D - 1 182 IPR029000 -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 371 388 - -
Vifa5g02600 664 MobiDBLite consensus disorder prediction 267 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02600 Vifa-Chr5 866502847 866507338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02600 25 171 U-box Gene Family AT5G67530 48.993 5.54e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02600 K09566 - gmx:100791082 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02600 5 866502847 866507338 Vifa5g02600 5 866502847 866507338 ECH