Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02595 ATGTCTAACAATCATAATCTACAATATGATGGTACTTCATTCATCATTGATATCACCAATACCTTCACAAAAGTCACTTCTCAATACACCAACAATGCAAAACGAAGGTGGCGTTTTGCTTATACAGCTATTTATTCTAGAAGGGTCATGCTTTCCCTTGCAAAAGAAGTTATATCCAGAAAAAATTCAAAACTCTTTCACACACAGTCTTCTAGCACCACTCTTGATGTAATTGAGCCACTGATTACTCGACATAACGAAACCAATCGTTATTCTTTGGTTTCTCGTGATGTTGATATGATCAAACTCGCTGATATGGTTAAGGACAACAACTTGAAGTCATTAGATGAGTTTGGAGGAGTGGAAGGTGTTGGAAATGTTCTTGGGACGGTTCCGAATAGGGGAATCGTTGGAAGTGATGATGATATTTCGAGACGGGTGGAGTTGTTTGGTTCGAATACTTACAAGAAGCCGCCTCCTAAAGGTCTTTTACATTTTGTGCTTGAAGCTTTCAATGATACAACTATTATTATCCTTCTTGTTTGTGCTGGACTTTCCCTTGGTTTTGGCATTAAGGAGCATGGACCAGGGGAAGGTTGGTATGAAGGTGGAAGTATATTTGTAGCGGTTTTTCTTGTGGTGGTTGTAAGTGCATTAAGCAATTTCAGACAAGAGAGACAGTTTCATAAACTGTCTAAGATAAGTAACAATATCAAAGTTAAGGCTGTGAGAAAGGGAAGGCCGCAGAATATATCGATTTTCGATGTTCTTGTGGGAGATATTGTGTCTCTCAAGATCGGTGATCAGATTCCAGCTGATGGAGTTTTTTTATCAGGTCATTCATTGCAGGTGGATGAGTCTAGCATGACAGGTGAGAGCGACCATGTAGAGATTGAGCCATTAAGAGCGCCTTTTTTGTTGTCCGGCGCGAAAGTGGTGGATGGATATGGGCAGATGCTTGTAACATCTGTTGGGAAAAACACGTCGTGGGGGCAAATGATGAGCTCGATATCGCGAGATACTAATGAGAGGACGCCGCTGCAAGCTCGCCTTGACAAGTTAACATCTTCGATCGGGAAGGAAAAGAAAGGGAATAAGAAGTTTCAAGGAAGTGACAGCGATGTAAACGATGTTTTGAATTCTGTTGTGAGTATTGTTGCGGCTGCGGTTACTATTGTGGTTGTGGCAATCCCCGAGGGTTTACCGTTGGCCGTGACGCTCACGCTTGCTTACTCGATGAAAAGAATGATGGCAGATCATGCCATGATGAGGGTGACCAAGTTTTCTCTCGGCCTTGAAAATTTTATCGAAAATTTTTCCAATGCAATGGCTCCGAACGTTCTCGAGTTATTCCACCAAGGGGTAGGCCTTAATACAACCGGAAGCGTCTATAAGCCTCCATCAGGATCTGAACCTGAAATTTCAGGTAGTCCAACGGAGAAAGCGATTCTTATGTGGGCGGTATCGGAATTAGGTATGGACATGGATGAAATGAAACAGAAACATAAGGTCCTTCATGTTGAAACGTTTAACTCAGAGAAGAAACGAAGCGGCGTGGCAATAAGGAAGGACAGCGATAGCCAAGTTCATGTACATTGGAAAGGAGCCGCAGAGATGATACTTGCAATGTGTACAAACTATATTGATAGTAACGGTGCGAGGAAGTCCCTCGACAGAGAAGAACGGTATAAAATCGAGAAGATAATTCAACGTATGGCCGCTAGTAGCCTAAGATGCATTGCTTTCGCTCATATGGAGATTTCAGATTCAGAAGAAAATGATTTTATGATCAAAAGGGAGGAGAAAAAGTCGCTAAGAGAAAACGGGTTAACCTTGCTTGGCATTGTTGGTCTCAAGGATCCATGTAGACCAAACACTAAGAAAGCTGTGGAAACTTGCAAAGCTGCAGGAGTCGAAATTAAGATGATCACCGGCGATAACATATTCACCGCAAAGGCAATAGCAACAGAATGTGGAATATTAGATCCTAAGGATCATGCAAATGCCGGAGAAGTGGTGGAAGGTGTTGAATTCAGAAACTATACAGAAGAAGAGAGAATGGAGAAAGTCGATAAGATCCGAGTGATGGCAAGATCATCTCCTATGGACAAACTCTTGATGGTGCAATGCCTGAGAAAGAAAGGCCATGTAGTTGCAGTCACAGGCGACGGTACAAACGATGCACCTGCATTAAAAGAAGCCGATATAGGACTCTCAATGGGAATCCAAGGAACCGAAGTCGCCAAAGAAAGTTCCGATATCGTTATCTTAGACGATAACTTCAACTCCGTCGCAACTGTTTTAAGGTGGGGAAGATGTGTTTACAACAACATCCAGAAATTCATTCAGTTTCAACTAACTGTCAATGTCGCAGCACTCGTGATAAACTTCATCGCAGCAGTATCTTCCGGCGATGTTCCCTTAACAACAGTTCAACTTCTTTGGGTGAATCTCATTATGGACACACTAGGTGCTTTGGCACTAGCAACAGAAAGGCCTACAAAGGAGTTAATGAAGAAAAAACCGATCGGTAGAACCGAGCCTCTTATCACAAACATCATGTGGAGAAACCTTCTAGCACAAGCTTCATATCAGATCGCGGTTCTTCTGATTATGCAGTTCTACGGAAAATCAATCTTCAACGTAAGTAAAGAGGTAAAAGATACACTAATCTTTAACACTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCGAGAAGCATGGAGAAACTATACGTATTCGAAGGCATTTTGAGAAACCATCTTTTTCTCGGAATTGTGGGGATAACTATTGTCCTTCAAATCTTGATGGTTGAACTGCTAAGGAAATTTGCTGATACAGAAAGATTAACATGGGAGCAATGGGGAATTTGTACCGGTATCGCAGTTGTTTCATGGCCTCTTGCTTGCATAGTAAAGCTCATACCTGTTTCAAATCAACATTCATTCAACTATACTAAGTGGGTTAAGTTATTAGTCTTCAAGATTAAGAAAGCTTTTTAA 3006 0.4162 MSNNHNLQYDGTSFIIDITNTFTKVTSQYTNNAKRRWRFAYTAIYSRRVMLSLAKEVISRKNSKLFHTQSSSTTLDVIEPLITRHNETNRYSLVSRDVDMIKLADMVKDNNLKSLDEFGGVEGVGNVLGTVPNRGIVGSDDDISRRVELFGSNTYKKPPPKGLLHFVLEAFNDTTIIILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVSALSNFRQERQFHKLSKISNNIKVKAVRKGRPQNISIFDVLVGDIVSLKIGDQIPADGVFLSGHSLQVDESSMTGESDHVEIEPLRAPFLLSGAKVVDGYGQMLVTSVGKNTSWGQMMSSISRDTNERTPLQARLDKLTSSIGKEKKGNKKFQGSDSDVNDVLNSVVSIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADHAMMRVTKFSLGLENFIENFSNAMAPNVLELFHQGVGLNTTGSVYKPPSGSEPEISGSPTEKAILMWAVSELGMDMDEMKQKHKVLHVETFNSEKKRSGVAIRKDSDSQVHVHWKGAAEMILAMCTNYIDSNGARKSLDREERYKIEKIIQRMAASSLRCIAFAHMEISDSEENDFMIKREEKKSLRENGLTLLGIVGLKDPCRPNTKKAVETCKAAGVEIKMITGDNIFTAKAIATECGILDPKDHANAGEVVEGVEFRNYTEEERMEKVDKIRVMARSSPMDKLLMVQCLRKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMKKKPIGRTEPLITNIMWRNLLAQASYQIAVLLIMQFYGKSIFNVSKEVKDTLIFNTFVLCQVFNEFNSRSMEKLYVFEGILRNHLFLGIVGITIVLQILMVELLRKFADTERLTWEQWGICTGIAVVSWPLACIVKLIPVSNQHSFNYTKWVKLLVFKIKKAF 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02595 1001 FunFam Calcium-transporting ATPase 616 766 - -
Vifa5g02595 1001 FunFam Calcium-transporting ATPase 738 980 - -
Vifa5g02595 1001 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 434 625 IPR023299 GO:0000166
Vifa5g02595 1001 FunFam Calcium-transporting ATPase 214 338 - -
Vifa5g02595 1001 Gene3D - 462 621 IPR023299 GO:0000166
Vifa5g02595 1001 Pfam Cation transporter/ATPase, N-terminus 120 186 IPR004014 -
Vifa5g02595 1001 SUPERFAMILY HAD-like 605 826 IPR036412 -
Vifa5g02595 1001 PRINTS P-type cation-transporting ATPase superfamily signature 636 646 - -
Vifa5g02595 1001 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Vifa5g02595 1001 PRINTS P-type cation-transporting ATPase superfamily signature 745 757 - -
Vifa5g02595 1001 PRINTS P-type cation-transporting ATPase superfamily signature 614 625 - -
Vifa5g02595 1001 PRINTS P-type cation-transporting ATPase superfamily signature 721 740 - -
Vifa5g02595 1001 NCBIfam HAD-IC family P-type ATPase 692 801 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa5g02595 1001 Gene3D - 767 975 - -
Vifa5g02595 1001 Pfam E1-E2 ATPase 238 358 - -
Vifa5g02595 1001 SUPERFAMILY Calcium ATPase, transduction domain A 237 336 IPR008250 -
Vifa5g02595 1001 Gene3D - 622 766 IPR023214 -
Vifa5g02595 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 978 IPR023298 -
Vifa5g02595 1001 FunFam Calcium-transporting ATPase 421 621 - -
Vifa5g02595 1001 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Vifa5g02595 1001 Pfam haloacid dehalogenase-like hydrolase 601 735 - -
Vifa5g02595 1001 Gene3D - 139 338 - -
Vifa5g02595 1001 PANTHER CATION TRANSPORTING ATPASE 90 979 - -
Vifa5g02595 1001 NCBIfam calcium-translocating P-type ATPase, PMCA-type 462 978 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vifa5g02595 1001 Gene3D - 169 424 - -
Vifa5g02595 1001 Pfam Cation transporting ATPase, C-terminus 806 976 IPR006068 -
Vifa5g02595 1001 Pfam Cation transport ATPase (P-type) 467 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02595 Vifa-Chr5 865034964 865038122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02595 33 988 Primary Pumps ATPases AT3G63380 65.507 0.0 1253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02595 K01537 - gmx:100790034 1522.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02595 5 865034964 865038122 Vifa5g02595 5 865034964 865038122 ECH