Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02592 ATGAACTATCTGTATCCAGTGAAAGAGGAGTATTTGGAATTCGAAGCAACCTCGTCGACAACATCAATGGTTGGTGTTCCACGACCAATGGAGGGTCTTCATGAAGTTGGACCACCACCATTTCTTACAAAAACTTTCGATGTTGTTGAGGATCCCACAACTAGTCACATAGTTTCATGGAACAGAGACGGTGTTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTTTCAAGTTTTGTTAGACAACTAAACACTTATGGTTTTAGAAAAATCGATCCTGAAAAATGGGAGTTTGCGAATGAAGGATTTGTGAGAGGGCATAAGCATCTTTTAGCAAACATTAAGAGGAGGAGACAAACATCACAGCCTAGTGTTTCTTCTTCTTCATCTCAACAATCATCAGTTGGTCAATGTGTTGAATTGGGTCGTTATGGATTAGACGAAGAAATCGATCATTTGAAGCGCGATAAACAAGTGTTAATGATGGAGCTTGTGAAGCTCAGACAGCAACAGCAGAACACAAGATTTTGTCTTCAAGCTATGGAGGAGAGGCTAAGAGGGACAGAGATTAAGCAGCAACAAATGATGGCTTTTTTGGCTAGAGCTATGAGAAATCCTGCTTTTATTCAGCAGTTAATTCAACATAAGGAAAGGAGAAAGGTGATTGAAGAAGATGTTACTAAGAAGAGGAGAAGGCCTATTGAGTATGGTGAATCAAGCAATAGTGTTGAATTTGGGTTTGGGTTTCAAGTTTCAGAGTTGGAGGTTTTGGCTATGGAAATGCAAGGTCTTGGAAGAGGTGGTGGAGAACAAGAACAAGAACAAGAACAAGAGGAAGAGAATGAGGTATTTGAGACTAATGAGAATTTGAATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTTAGTGAAAAATTTGAGAGTGAGTTAGATATTTTATATTCTCAAAGTATTGATGAAGATCATGTCAATGTATTGGCTAATCGCTTTGGTAACTTGGGTTCAAGCCCGAAATGA 1059 0.3872 MNYLYPVKEEYLEFEATSSTTSMVGVPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWNRDGVSFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPEKWEFANEGFVRGHKHLLANIKRRRQTSQPSVSSSSSQQSSVGQCVELGRYGLDEEIDHLKRDKQVLMMELVKLRQQQQNTRFCLQAMEERLRGTEIKQQQMMAFLARAMRNPAFIQQLIQHKERRKVIEEDVTKKRRRPIEYGESSNSVEFGFGFQVSELEVLAMEMQGLGRGGGEQEQEQEQEEENEVFETNENLNKELDEGFWEELFSEKFESELDILYSQSIDEDHVNVLANRFGNLGSSPK 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02592 352 MobiDBLite consensus disorder prediction 130 149 - -
Vifa5g02592 352 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 Gene3D - 34 131 IPR036388 -
Vifa5g02592 352 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 SUPERFAMILY "Winged helix" DNA-binding domain 37 130 IPR036390 -
Vifa5g02592 352 Coils Coil 286 309 - -
Vifa5g02592 352 Coils Coil 163 183 - -
Vifa5g02592 352 FunFam Heat shock transcription factor 1 34 131 - -
Vifa5g02592 352 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa5g02592 352 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 284 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02592 Vifa-Chr5 863056997 863058432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02592 15 350 HSF AT3G22830 50.000 2.07e-119 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa5g02592 HSF_DNA-bind 6e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02592 K09419 - gmx:100811798 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02592 5 863056997 863058432 Vifa3g01396 3 364079922 364081230 PCT