Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02587 ATGGAGCAGTATGAAGTTCTAGAGCAGATCGGGAAAGGTGCATTTGGTTCTGCGCTGCTTGTGCGGCACAAACATGAAAAGAAAAAGTATGTCCTCAAGAAGATCCGTCTTGCTCGCCAAACTGACAGAACCCGCAGATCGGCTCACCAGGAGATGGAGCTTATATCAAAAGTTCACAATCCGTTTATTGTGGAGTATAAAGACTCTTGGGTAGAAAAGGGTTGTTTTGTATGTATTATCATCGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATAAAAAAGGCCAACAGTGTTAACTTTTCTGAAGAGAAACTCTGCAAGTGGCTTGTCCAGTTACTGATGGCACTAGATTACTTACATGTAAATCATATTCTTCATCGTGATGTTAAGTGTTCAAATATATTCTTGACGAAAGATCAAGATATACGTCTAGGTGATTTTGGTCTCGCTAAAATGTTGACTTCTGATGATCTTGCTTCCTCGATTGTTGGGACTCCAAGTTATATGTGCCCTGAGCTTCTTGCTGATATACCGTATGGCTCTAAGTCAGATATCTGGTCTTTAGGATGCTGTGTTTATGAAATGACAGCTCACAGGCCAGCTTTCAAAGCTTTTGATATACAAGCATTGATTCACAAAATAAACAAGTCTGTAGTATCTCCACTGCCAACTATGTACTCTAGTGCTTTCCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCTGGAGAGTTACTAAATCATCCACATCTTCAGCCGTACATTCTTAAAATTCACCAAAAACTAAATAGCCCCAGAAGAAGCACTTTTCCATTCCAATGGTCCGAGTCAAACTATGCAAGGAGAACTCGCTTTGTGGAACCCGAATCTGTTTCTACACTTTCTGACCAAGACAGATACTTGTCCCTAAACAATCACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAGCAAAGTTCTCAATATTCAACTCAAAGAGCTCAAGGATTATCCAATTGTTCAGAAGAAAAGCTCTATAACTTATCTGCTGGCGGTATCCGTGATTACTGTAATACTAACAAATCAAAAGCAATAAAGTCCTCAACTGGTGAGAGAACACCAAGAGTTAGAGTAGCTAAGGATTCTGCTGGTGCCAGAAGACAGACATTGGCACCGCCAAAGATATCGGTTGCTGGTTCAAAGCGTGAATCACTTCCGGTACCTCGCGCACCATCTGGTAAATCTACCATGCCAACTCGAAGAACATCTCTTCCGCTGCCTACAAGAGGCAGAAACAAAACAAACTTATACACCAATGCTAGTTATGTGGACTCTCCTGATGTTTCTGTTGATGCACCACAAATCGACAAGATCGCAGAATTCCCAATGGCTTCGTATGAGGATCCATTCTTTCATGTTATTCGCAGATCGTCATCACCATCAGCCAAACGCTTTTCTAGCTCCGCAGGGAGTGCTGATTGCACAATCACAAAAGACAAGTGTACAATCCTTGTGGACAAAGTTGCTGTCCCCGTTAGCATCACTGATGCTGGCAGCGGTGTTCCATTTCCAAATGGCAGTGCCAATGAATGCTCTAACAATGTTACAACCGGCATTTCAAGCCACTCCTCATCTGAGTCGCGTCAGCATCGGTTTGACACCTCGTCATACCAGCAACGTGCCGAGGCATTGGAGGGGCTACTGGAGTTCAGTGCTAGGCTGCTACAACAACATAGGTTTGATGAGCTTGGTGTATTGCTGAAGCCATTTGGGCTCGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGGCCAAGAGCTTTAAACAAAACTCTTAA 1839 0.4328 MEQYEVLEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVHNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANSVNFSEEKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMTAHRPAFKAFDIQALIHKINKSVVSPLPTMYSSAFRGLVKSMLRKNPELRPTAGELLNHPHLQPYILKIHQKLNSPRRSTFPFQWSESNYARRTRFVEPESVSTLSDQDRYLSLNNHRALNPSISGTEQSSQYSTQRAQGLSNCSEEKLYNLSAGGIRDYCNTNKSKAIKSSTGERTPRVRVAKDSAGARRQTLAPPKISVAGSKRESLPVPRAPSGKSTMPTRRTSLPLPTRGRNKTNLYTNASYVDSPDVSVDAPQIDKIAEFPMASYEDPFFHVIRRSSSPSAKRFSSSAGSADCTITKDKCTILVDKVAVPVSITDAGSGVPFPNGSANECSNNVTTGISSHSSSESRQHRFDTSSYQQRAEALEGLLEFSARLLQQHRFDELGVLLKPFGLEKVSPRETAIWLAKSFKQNS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02587 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vifa5g02587 612 Gene3D Transferase(Phosphotransferase) domain 1 86 335 - -
Vifa5g02587 612 SUPERFAMILY Protein kinase-like (PK-like) 1 330 IPR011009 -
Vifa5g02587 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02587 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02587 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Vifa5g02587 612 MobiDBLite consensus disorder prediction 365 433 - -
Vifa5g02587 612 MobiDBLite consensus disorder prediction 535 555 - -
Vifa5g02587 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 569 - -
Vifa5g02587 612 MobiDBLite consensus disorder prediction 368 382 - -
Vifa5g02587 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vifa5g02587 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02587 612 CDD STKc_Nek 3 258 - -
Vifa5g02587 612 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Vifa5g02587 612 MobiDBLite consensus disorder prediction 415 433 - -
Vifa5g02587 612 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02587 Vifa-Chr5 861392103 861395947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02587 10 289 MAP Kinase Kinase Kinase AT1G53570 29.431 7.86e-38 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa5g02587 Pkinase 2.5e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02587 K08857 - gmx:100805201 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02587 5 861392103 861395947 Vifa5g02587 5 861392103 861395947 ECH