Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02551 ATGTTAAAAAGATTGGAAGAAAAGATTGAAGGGCGAGTACTGAAGCAAATGTTATATCTTCTGTGCTTCGGAGAAAAGGGTGTTCAGAAACGTGTAGCTCTTGCTCTTGCACATTTGTGTTCTGCTGATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGATCTTCTTGAATCTACAACTAAAAAGCAGAAGCGTGAAGCCTCTGCAGCGCTTCACACAATGGCTACCAAAGGAATGAGTGCCTCTATTGTTGATCTTGCGCCTGCATCACCAACTCCCAGGGTTTACTTGGGTGAGCAATATCTAAACAATCCAGTACTTTCTGATGTCACCTTCATAGTTGAAGGCAAACGCTTTCATGCTCATAGAGCTTGTTTACTTTCATCTTATATATTTGGTGCAATGTTTGATGGGGGTTACAAGGAAAAGGAAGCGAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACCGGAACCGTAGATGTTGATTTGGATGTTGCCCCAGACCTCCTTAAAGCTGCAGATCAATATCTTCTCGACGGTCTTAAGCGTATATGTGAATCTGTTATTTCTGAGGATATTTCTGTGGAAAATGTTTCACATATGTATGTGATGTCAGACACTTATAATGCGACATCGCTAAAATATTCATGCATACTCTTTATCTTGAAGCAATTTGATAACTTGAGCTCCAAACCATGGTATTGTCACTTTATCCGTTGCATTAAGCCAGACATTCGGAACTTCTTCTCGACTTTACTTACCATGCCTAAACACACTGGCTAG 834 0.3897 MLKRLEEKIEGRVLKQMLYLLCFGEKGVQKRVALALAHLCSADDRKTIFIDNNGLELLLDLLESTTKKQKREASAALHTMATKGMSASIVDLAPASPTPRVYLGEQYLNNPVLSDVTFIVEGKRFHAHRACLLSSYIFGAMFDGGYKEKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAPDLLKAADQYLLDGLKRICESVISEDISVENVSHMYVMSDTYNATSLKYSCILFILKQFDNLSSKPWYCHFIRCIKPDIRNFFSTLLTMPKHTG 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02551 277 Gene3D - 4 101 IPR011989 -
Vifa5g02551 277 SMART BTB_4 114 210 IPR000210 GO:0005515
Vifa5g02551 277 SUPERFAMILY POZ domain 105 207 IPR011333 -
Vifa5g02551 277 SUPERFAMILY ARM repeat 10 84 IPR016024 -
Vifa5g02551 277 Gene3D Potassium Channel Kv1.1; Chain A 105 248 IPR011333 -
Vifa5g02551 277 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 2 273 IPR044282 -
Vifa5g02551 277 ProSiteProfiles BTB domain profile. 114 180 IPR000210 GO:0005515
Vifa5g02551 277 Pfam BTB/POZ domain 106 208 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02551 Vifa-Chr5 847238238 847240137 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa5g02551 BTB 3.4e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02551 - - qsu:112036025 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02551 5 847238238 847240137 Vifa5g02551 5 847238238 847240137 ECH