Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02550 ATGGAGCGCAAGCAAAATTTGAAGAGGAAATTTGATTTCACTGAAGAAGGTGTTGTTCGTGAAAACTCTCGCCGTCTAACTCTCGCCGATGATATTGCTCAACGCATCGATTTGTTAAACTCGATTTCTTCGTCGTTGTCTGATCCGGATATTGGTGCTGCTCAAAATGATCTCTGTTTTCTTTCTGGATACGCCAAAGACGAGGATATTGTGGATCTTATGGTAGTTTCTGGTGTTGTTCCCGCTCTCGTGAAGGTTTTGCATATGGTGTCTAATCTAGGTGATTTTGACGCTGATACTTATGACGTGGAAAAAGACTGTGTCTCTATCCTCGGTCATCTCGCTGTCAAGCCGGATCATCAACAACTCATTGTTGATGCTGGAGCCTTGCCTTGTCTTGTAGAATTGTTGATGAGACCGAAGGCCCCTGATGTTTCTCAAGCACTTTTTTCTAGTCTTCTTGGGAGAGCAGCTGATGCGATAACTAATCTTGCTCATGAAAATATCAACATCAAGACCCTTGTCAGGTTGGAAGGTGGCATCCCTCCTCTCGTTGATTTGCTTGAATTCAATGATACAAAGGTACAGAGAGCTGCTGCAGGGGCCCTGAGAACTCTTGCATTTCAAAATGCTGAGAATAAAGACCAGATTGTTGAATGCGATGCGTTGCCCACTCTTGTACTAATGCTTGGATCAGAGGATCCTGCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTTGTCCATTCTTCGCCTGAAATTAAGAGAGAAGTTCTTCTAGCAGAGGCTTTACAACCAGTTATTTGCCTACTAAGTTCCCCCTGTTTGGAGACCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTTGCCACAACAGATTCAGATTGCAAGATTCACATTGCCCAAAGAGGTGCTATAATCCCTTTAATCAAAATGCTCAAGTCTCCAGATTTACAACTTAGGGAAATGTCAACTTTTGCACTTGGGAGGTTGGCACAGGACTCACACAATCAAGCTGGCATTGCTTACAATGGAGGTATAGAGCCTCTCCTCAATCTTCTTGTCACAAATAATCCTTCTGTCCAACACAATGCAGCTTTTGCTCTTTATGCTCTTGCTGATAATGAGGACAATGTTCCTCTTATTATTAAAGCTGATGGCTTACAAAAACTACAGGATGGGCATTTCAGTGTTCTACCTACTCAAGAGTGTGTAGCAAGGATGTTAAAAAGATTGGAAGAGAAGATGCAAGGGCGAGTACTGAAGCAAATGTTATACCTTATGCGCTCTGGGGAAAAGGGTGTTCAAAAACGTGTAGCTCTTGCTCTTGCACATTTATGTTCCGCCAATGATCGTAAAACTATTTTCATTGACAATAATGGATTAGAATTGCTGTTGGATCTTCTTCTTGAATCTACAACCAAAAAGCAGAAGCGTGAAGCCTCTGCAGCACTTCACACAATGGCTACTAAAGGAATAGGTGCCTCTATTGTTAATCTTGCGCCTACATCACCAACTGCTCAGGTTTACTTGGGTGAGCAATATGTAAACAACCCACTACTTTCTGATGTCACATTCATAGTTGAAGGCAAACTCTTTTATGCTCATAGAGTTTGTTTAGTTTCATCCATTATATTTCGCGCAATGTTTGATGGGGGTTACAGGGAAAAGGAAGCCAAGGATATAGAGATTCCAAATATTAAATGGAATGTCTTTGAGTTGATGATGAGATTTATATACACCGGAACTGTAGATGTTGATTTGGATGTTGCCCCAGACCTCCTTAAAGCTGCAGATCAATATCTTCTCGACGGTCTTAAGCGTATTTGTGAATCTGTTATTTCTGAGGATATTTCTGTGGAAAATGTTTCACTAATGTATGTGATGTCAGACACTTATAATGCTACATCATTAAAATATTCATGCATACTCTTTATCTTGGAGCAATTTGATAACTTGAGCTCCAAACCGTGGTATTGTCCCTTTATCCGTTGCATTAAGCCAGACATTTGGAACTTCTTCTGGACTTTACTTACCACGCCTAAACATGATGACTAA 2061 0.41 MERKQNLKRKFDFTEEGVVRENSRRLTLADDIAQRIDLLNSISSSLSDPDIGAAQNDLCFLSGYAKDEDIVDLMVVSGVVPALVKVLHMVSNLGDFDADTYDVEKDCVSILGHLAVKPDHQQLIVDAGALPCLVELLMRPKAPDVSQALFSSLLGRAADAITNLAHENINIKTLVRLEGGIPPLVDLLEFNDTKVQRAAAGALRTLAFQNAENKDQIVECDALPTLVLMLGSEDPAIHYEAVGVIGNLVHSSPEIKREVLLAEALQPVICLLSSPCLETQREAALLIGQFATTDSDCKIHIAQRGAIIPLIKMLKSPDLQLREMSTFALGRLAQDSHNQAGIAYNGGIEPLLNLLVTNNPSVQHNAAFALYALADNEDNVPLIIKADGLQKLQDGHFSVLPTQECVARMLKRLEEKMQGRVLKQMLYLMRSGEKGVQKRVALALAHLCSANDRKTIFIDNNGLELLLDLLLESTTKKQKREASAALHTMATKGIGASIVNLAPTSPTAQVYLGEQYVNNPLLSDVTFIVEGKLFYAHRVCLVSSIIFRAMFDGGYREKEAKDIEIPNIKWNVFELMMRFIYTGTVDVDLDVAPDLLKAADQYLLDGLKRICESVISEDISVENVSLMYVMSDTYNATSLKYSCILFILEQFDNLSSKPWYCPFIRCIKPDIWNFFWTLLTTPKHDD 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02550 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 346 388 IPR000225 GO:0005515
Vifa5g02550 686 Gene3D - 256 397 IPR011989 -
Vifa5g02550 686 Gene3D - 399 502 IPR011989 -
Vifa5g02550 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 179 214 IPR000225 GO:0005515
Vifa5g02550 686 ProSiteProfiles BTB domain profile. 523 589 IPR000210 GO:0005515
Vifa5g02550 686 Pfam Armadillo/beta-catenin-like repeat 178 207 IPR000225 GO:0005515
Vifa5g02550 686 Pfam Armadillo/beta-catenin-like repeat 210 249 IPR000225 GO:0005515
Vifa5g02550 686 Gene3D - 151 255 IPR011989 -
Vifa5g02550 686 SUPERFAMILY ARM repeat 156 489 IPR016024 -
Vifa5g02550 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 128 179 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 117 166 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 67 116 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 450 491 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 335 375 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 252 292 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 294 334 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 167 208 IPR000225 GO:0005515
Vifa5g02550 686 SMART arm_5 210 250 IPR000225 GO:0005515
Vifa5g02550 686 SMART BTB_4 523 619 IPR000210 GO:0005515
Vifa5g02550 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 78 129 IPR000225 GO:0005515
Vifa5g02550 686 Pfam BTB/POZ domain 516 617 IPR000210 GO:0005515
Vifa5g02550 686 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 305 347 IPR000225 GO:0005515
Vifa5g02550 686 Gene3D Potassium Channel Kv1.1; Chain A 514 657 IPR011333 -
Vifa5g02550 686 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 3 683 IPR044282 -
Vifa5g02550 686 SUPERFAMILY POZ domain 514 616 IPR011333 -
Vifa5g02550 686 Gene3D - 23 150 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02550 Vifa-Chr5 847216492 847220848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02550 100 490 U-box Gene Family AT3G46510 24.257 1.17e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vifa5g02550 BTB 5.8e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02550 - - qsu:112036025 813.913