Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02531 ATGAGTTACCAAATGAATGGTGAGGATGCACGCAGAGATTTAAAAAGAAAGCTCCCTCAGATGGATCGAGGGCAAGAACGGAGATCTTATAATATGAATTCTACACCTTATGATAGGAATGCACTTCCTCACGGTTGGTTAGACTGCCCACCACACGGGCAAGAACTAGGTTGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATTACATTCCGAATAAAAAATATACCCCCAAGCAAGCAATTCTTCAACAAAGAGCTTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTACTATCCATTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATGATGAATCTGTACAAAATTTTTGCAATGAGGTTCTGGATTTTTGCTCTCAAAGTTCAAACACAAAGAAATATATACTTGTACACTGCACTCATGGGCATAATCGTACAGGCTATATGATTGTTCATTTTCTTGTGCGTACAGAATCACTATCTGTCACTGAGGCAATAAGTAAATTTGCACAGGCACGTCCCCCAGGAATTTACAAACAGGATTACATTGACACATTGTACATGTTTTTTAATGAAAAGAAGCCCGAAAGTCTTGTTTGTCCACAAACTCCAGAATGGAAGAGCTTCCCTGATCCTGACGTACATGGCGTGTCTGTCTCAGCTACAGACAATCATGCAGACATTTTGCAGCAGGGGAATGTCGCGAGGAACGGAGTAATGACAAATGATGATGTTTTGGGAGATCCGATTCCTTCAAACCAGCTACGGACAATGCAAGAACTTTGTTATCAACTGCTCAAGTTGGGCAAAGGGGGAAGAGGAGTTTTGTACTTTCCCGGATCACACCCTGTTTCTCTGAACAGGGAGAATTTACAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGACGGGACACGGTATATGATGCTAATCACTGGGGATGGATGTTATCTGATCGACAGAAAATTTCATTTCCAAAGGATCTCTATGCGGTTTCCTTGCAAATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGACGGGGAAATGATTATTGACACGGATCCACATACTCATAAGCAAGAAAGAAGATACCTCATTTATGATTTGATAGCAATCAATCAAGTCTCTCTGACAGAGATGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCCCGTAACATGGAACGAGAAACCCTTTCCAAGAGTATAAGTCCTTATTATAGATACGACTTGGAACCATTTGGTGTGAGGAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACACTCATCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACGCATGAAGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCTGTTGATTTCCACTTTGAGGTGGGAGCTGATGGTCGACCCCTGCTTTTTCTGTTTGAACGTGGAAAGAAGAAGTTAATGGAAGGGAATACTGTTATTTTTAAAGATTCGGAAGATATTTCTTCCTATTCAGGGAGGATAATCGAGTGCTACTGGGATGCTGCAGAGCATCACTGGGTCTGCATGCGGATCAGAGCTGACAAAGCAACTCCAAATGAGATCAATACGTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGAAGTCGTGTTGAAGGAGATTAGTGAGATCATTCGACTTCCCTTGTATGCAGACAGAATACAGAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCGCGGCGCAAAAGAGTTTTATAG 1914 0.4159 MSYQMNGEDARRDLKRKLPQMDRGQERRSYNMNSTPYDRNALPHGWLDCPPHGQELGCIIPSKVPLGESFNDYIPNKKYTPKQAILQQRALGRELGLVIDLTNTTRYYPLSDWTKEGIGHVKIRCKGRDSVPDDESVQNFCNEVLDFCSQSSNTKKYILVHCTHGHNRTGYMIVHFLVRTESLSVTEAISKFAQARPPGIYKQDYIDTLYMFFNEKKPESLVCPQTPEWKSFPDPDVHGVSVSATDNHADILQQGNVARNGVMTNDDVLGDPIPSNQLRTMQELCYQLLKLGKGGRGVLYFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFHFQRISMRFPCKYSNGGTPERNHHYTLLDGEMIIDTDPHTHKQERRYLIYDLIAINQVSLTEMPFYERWKLLEKEVIEPRNMERETLSKSISPYYRYDLEPFGVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFHFEVGADGRPLLFLFERGKKKLMEGNTVIFKDSEDISSYSGRIIECYWDAAEHHWVCMRIRADKATPNEINTYRKVMRSIKDNITEEVVLKEISEIIRLPLYADRIQRDIKAHQHMVSSRRKRVL 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02531 637 FunFam mRNA capping enzyme, putative 264 501 - -
Vifa5g02531 637 Pfam mRNA capping enzyme, C-terminal domain 508 601 IPR013846 -
Vifa5g02531 637 PANTHER MRNA-CAPPING ENZYME 37 615 - -
Vifa5g02531 637 FunFam mRNA capping enzyme family protein 38 251 - -
Vifa5g02531 637 Pfam mRNA capping enzyme, catalytic domain 305 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifa5g02531 637 FunFam mRNA capping enzyme family protein 502 611 - -
Vifa5g02531 637 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Vifa5g02531 637 CDD Adenylation_mRNA_capping 276 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Vifa5g02531 637 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 229 IPR029021 -
Vifa5g02531 637 CDD RNA_5'-triphosphatase 45 211 - -
Vifa5g02531 637 Pfam Dual specificity phosphatase, catalytic domain 94 213 IPR000340 GO:0008138|GO:0016311
Vifa5g02531 637 SUPERFAMILY Nucleic acid-binding proteins 506 619 IPR012340 -
Vifa5g02531 637 Gene3D Protein tyrosine phosphatase superfamily 17 235 IPR029021 -
Vifa5g02531 637 Gene3D DNA ligase/mRNA capping enzyme 264 503 - -
Vifa5g02531 637 SMART dsp_5 75 215 IPR020422 GO:0006470|GO:0008138
Vifa5g02531 637 Gene3D - 504 596 IPR012340 -
Vifa5g02531 637 PIRSF mRNA_capping_HCE 28 636 IPR017074 GO:0004484|GO:0006370|GO:0140818
Vifa5g02531 637 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 279 504 - -
Vifa5g02531 637 MobiDBLite consensus disorder prediction 8 24 - -
Vifa5g02531 637 MobiDBLite consensus disorder prediction 1 35 - -
Vifa5g02531 637 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02531 Vifa-Chr5 837648990 837657734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02531 31 624 Protein tyrosine phosphatase (PTP) family AT3G09100 62.625 0.0 785
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02531 K13917 - gmx:100793183 1113.21