Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02530 ATGTTCCAAACGAGACAAGAAAACATACCTCAAACAAAAATTCACTTGTGTGTTTGTCATCTTCGGTCTCGTTCTTGCCTTTTCACACTATCTAGTTGTTCTTTGTGCCCTAGCTATGGAGAAAAAGATGTAAATGCTTGCAACAGGTACCCAGACACTTCCAGCACCAGCGTTGTCTATCACACTCAAGTGCAATTGTGCAAATATACGAGAAGGAACCATACAATGTCGAGAATATGTGTGAAGAATCTCCCTAAATACGTTGCAGAGGATCGACTAAAAGAATTATTTTCTCAGAAAGGAGAAATAACTGATGTCAAGCTTATGCGTACCAAAAACGGTAAAACTCGACAATTTGCTTTTATCGGATTTCGTACAGACCAGGAAGCTCAGGAAGCGATTCGATATTTCAATAGATCTTACCTTGGCACACTCAGAATTACTTGTGAGGTGGCTCAAAAACAATGTGATGTGAATCTTCCTCGTCCGTGGAGTAAACATTCACATTCTACAAAAATAGACAATAAAGTTATCACTCCATATGCGAACAATGCTAAAGCTAAAGGGCAAGGAGACTATTCTAAGAACATTGATGACCCGAAACTTCAAGATTTTCTTCAGGTCATGCAACCTCGGGCAAAGTCTAAGTTGTGGGGAAATGATACTTCGGTTGTATCCAATGATGGCAACAACCAAGCAACATTGAATAAGGAGACCAAAGGTACATCAGTTGCAAATCATCCTATCTTAAGCGTCTCACAAGTAGATGGATTACCAAATAATCCTGAATCCGACAAGTCACACGAGCTTAAGCATGATAAAGTGATATCGGATATGGATTATTTCAAGAGTAAAGTGACAACGGAGTGGTCTGATTCTGAAAGCAGCAATGATGAAAACGACGACGACAACAATGATTTGGCATCTTCTGACGATGATGACAAAGATAACCACAAACATGTTAGTGAACATGAAGTAAATTGTGTTAATAACCCTTCTGAAAGAGCCCCAAAAAGTGGTGCTCAACAGTTAGATTTAGAGGGCCAAGAAGATGCTTTTAGAGAGGATGTTGCCAATGACAAGTCTCAAGTGAATGCAACTGAAGAAGGGGGGCAGTTATCCAATCCAGAAGATAATAAAGGAGTTTCTGAGTCATGCCGACTGTTTGTCCGTAATCTGCCGTATACGACCAGCGAGGAGGAACTGGAAGAGCATTTCAGTCAGTTTGGCAGTGTCTCACAGGTTCATTTAGTTGTTGATAAGGAGACGAAACGATCCAGAGGAATAGCTTATATTCATTTTTCAATTCCAGAGTTGGCAGCCAGGGCGTTAGAAGAGTCAGACAATTCAATATTCCAGGGGAGATTATTGCATGTTATGCCAGCTATAGAAAGACATTCAAAAAATGAAGAGAACAAGGACCAAGACTCTAAACCTCTCAAACAACGAAGAGCAGACGAGAGGAAAGCAGCTGAGGCTAGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGACACAGTTGTAGAAAACATTGCTCGGAAATATGGTGTTAGTAAAAGTGATTTAATGGATCGTGAAGCTGATGATCTTGCTGTACGTATTGCTCTGGGAGAAACTCAAGTAATTTCAGAAACAAAAAGTGCATTTAAAAAAGCTGGAGTGAATGTGGAGTCTTTGGAAGAACTTGCGAAGGGTAAAGTTGAAGGCCTTAAAAGAAGTAACCATGTACTTTTAGCAAAAAACTTGCCCTATGGTTCTACGGAAAGTGAACTTGCGAAGATGTTTGGGAAATTTGGTAGCTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTGTCTTCCTTGAACCAGCAGAAGCTAAATCTGCTTTTAAAGGGTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCGACATTCTTCTCCCAGAATCAACATCTGAAAATAATGATGTGAATAGTGGAATTGGTGAAATGGATGTCAAGCGATTGATACTAGAGAAAGACGTGGAAAGAATATCAGATATGGATATTGATCCAGACAGAATAGAGGCTCGGTCTATATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGAGTTTGAAGCAACATTTCAGTGAACACATGAAAGAGGGGCGGATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTATTGAATTTGACTCCACAGAGACTGCCACGAGTGTTCGTAGCAATTTGCAGGGGACTGTTTTGGACAGTCATGCTCTTAATTTACAACCTTGTCATGTCAAGGATGGTGGTAAAACACTAAAGAAAGTTGAGAAAGACAAGAGTTCAACTAAGTTGCTTGTGAAAAATGTTGCTTTCGAGGCAACAGAGAAGGATCTGAGACAATTGTTTAGTCCGTTTGGCCAGATTAAAAGCTTAAGATTGCCAATGAAGTTTGGAAATCATAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCGCAGAATGCTCTTACAGCACTCTCAAGCACTCACTTGTATGGGAGACATCTGGTGATAGAGAGAGCGAAAGAAGGGGAGAGTTTGGAGGAACTGCGTGCTCGAACTGCTGCTCAATTTAATGAACACAGTGGATTTCAAGATGCTTCATCCAAGAAAAGGAAGGCCTTTAGCATGCTAGATGAAGAAAATATGAAGTTTCAAAGGTTTGATTAG 2763 0.4046 MFQTRQENIPQTKIHLCVCHLRSRSCLFTLSSCSLCPSYGEKDVNACNRYPDTSSTSVVYHTQVQLCKYTRRNHTMSRICVKNLPKYVAEDRLKELFSQKGEITDVKLMRTKNGKTRQFAFIGFRTDQEAQEAIRYFNRSYLGTLRITCEVAQKQCDVNLPRPWSKHSHSTKIDNKVITPYANNAKAKGQGDYSKNIDDPKLQDFLQVMQPRAKSKLWGNDTSVVSNDGNNQATLNKETKGTSVANHPILSVSQVDGLPNNPESDKSHELKHDKVISDMDYFKSKVTTEWSDSESSNDENDDDNNDLASSDDDDKDNHKHVSEHEVNCVNNPSERAPKSGAQQLDLEGQEDAFREDVANDKSQVNATEEGGQLSNPEDNKGVSESCRLFVRNLPYTTSEEELEEHFSQFGSVSQVHLVVDKETKRSRGIAYIHFSIPELAARALEESDNSIFQGRLLHVMPAIERHSKNEENKDQDSKPLKQRRADERKAAEASGDTRAWNSLFMRPDTVVENIARKYGVSKSDLMDREADDLAVRIALGETQVISETKSAFKKAGVNVESLEELAKGKVEGLKRSNHVLLAKNLPYGSTESELAKMFGKFGSLDKIILPSTKTLALVVFLEPAEAKSAFKGLAYKRYKDAPLYLEWAPSDILLPESTSENNDVNSGIGEMDVKRLILEKDVERISDMDIDPDRIEARSIFVKNLNFKTTDESLKQHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFIEFDSTETATSVRSNLQGTVLDSHALNLQPCHVKDGGKTLKKVEKDKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDASSKKRKAFSMLDEENMKFQRFD 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02530 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 698 781 IPR000504 GO:0003723
Vifa5g02530 920 SUPERFAMILY RNA-binding domain, RBD 575 663 IPR035979 GO:0003676
Vifa5g02530 920 CDD RRM3_RBM19_RRM2_MRD1 387 460 - -
Vifa5g02530 920 SUPERFAMILY RNA-binding domain, RBD 73 158 IPR035979 GO:0003676
Vifa5g02530 920 MobiDBLite consensus disorder prediction 363 381 - -
Vifa5g02530 920 SUPERFAMILY RNA-binding domain, RBD 793 877 IPR035979 GO:0003676
Vifa5g02530 920 SMART rrm2_1 387 460 IPR003954 GO:0003676
Vifa5g02530 920 SMART rrm2_1 78 150 IPR003954 GO:0003676
Vifa5g02530 920 MobiDBLite consensus disorder prediction 217 273 - -
Vifa5g02530 920 CDD RRM1_MRD1 77 152 - -
Vifa5g02530 920 Gene3D - 571 667 IPR012677 -
Vifa5g02530 920 Gene3D - 789 900 IPR012677 -
Vifa5g02530 920 Gene3D - 352 498 IPR012677 -
Vifa5g02530 920 SMART rrm1_1 78 150 IPR000504 GO:0003723
Vifa5g02530 920 SMART rrm1_1 799 870 IPR000504 GO:0003723
Vifa5g02530 920 SMART rrm1_1 387 460 IPR000504 GO:0003723
Vifa5g02530 920 SMART rrm1_1 579 646 IPR000504 GO:0003723
Vifa5g02530 920 SMART rrm1_1 699 777 IPR000504 GO:0003723
Vifa5g02530 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 154 IPR000504 GO:0003723
Vifa5g02530 920 CDD RRM4_RBM19_RRM3_MRD1 578 649 - -
Vifa5g02530 920 FunFam Multiple RNA-binding domain-containing protein 1 792 897 - -
Vifa5g02530 920 MobiDBLite consensus disorder prediction 464 494 - -
Vifa5g02530 920 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 679 790 - -
Vifa5g02530 920 Gene3D - 61 159 IPR012677 -
Vifa5g02530 920 MobiDBLite consensus disorder prediction 294 310 - -
Vifa5g02530 920 MobiDBLite consensus disorder prediction 311 325 - -
Vifa5g02530 920 MobiDBLite consensus disorder prediction 288 345 - -
Vifa5g02530 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 798 874 IPR000504 GO:0003723
Vifa5g02530 920 CDD RRM6_RBM19_RRM5_MRD1 798 872 - -
Vifa5g02530 920 FunFam Multiple RNA-binding domain-containing protein 1 569 671 - -
Vifa5g02530 920 MobiDBLite consensus disorder prediction 359 382 - -
Vifa5g02530 920 SUPERFAMILY RNA-binding domain, RBD 685 781 IPR035979 GO:0003676
Vifa5g02530 920 PANTHER RNA-BINDING MOTIF PROTEIN 14B 787 904 - -
Vifa5g02530 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 386 464 IPR000504 GO:0003723
Vifa5g02530 920 MobiDBLite consensus disorder prediction 217 261 - -
Vifa5g02530 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 388 458 IPR000504 GO:0003723
Vifa5g02530 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 800 867 IPR000504 GO:0003723
Vifa5g02530 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 145 IPR000504 GO:0003723
Vifa5g02530 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 583 641 IPR000504 GO:0003723
Vifa5g02530 920 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 700 774 IPR000504 GO:0003723
Vifa5g02530 920 Gene3D - 695 784 IPR012677 -
Vifa5g02530 920 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 578 650 IPR000504 GO:0003723
Vifa5g02530 920 SUPERFAMILY RNA-binding domain, RBD 378 469 IPR035979 GO:0003676
Vifa5g02530 920 CDD RRM5_RBM19_like 699 777 IPR034423 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02530 Vifa-Chr5 837433168 837444104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02530 700 891 Eukaryotic Initiation Factors Gene Family AT4G34110 30.882 6.03e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02530 K14787 - gmx:100798742 1157.13