Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02499 ATGTCACTTCTCTCCACTTTCTTTCCCTCCCTTTTCCTTCTCCTCATTTTCCCCTCCTTTTCCTTCTCCGCCACACCATGTCCCCTCAACATAACCCTCCTCCGCGTAATCGGCGACGGCTCACGCCCTTCCACCACCTCCGACTCCCAGTGCCACTACATCCTCCAAGCCCTCCACCTCGTCCAAGCCGACTACCTCCACCGCACCGGCCTCTTCGTCCCACCTCCCAACACCTCCGAATCATGCTGGTCCTCCTTCCAATCCTTCATCGATGAATTCCAACCTAACTTCGACATCCGCTCCTCCTGCGGCTTTCAAACCTCGTGGATCTCTCAAGGCTGCATGAACATCACAACCAAACAACAATTCGAACAACAAGTTTCGTTACCAGCACTTCGATCTCTTCAATCCAACTGCAACGTTTCTCTTGATAACAACTCTCCTTGCGCTCTCTGCACAGGAGCACGCTCGCAAGTTCTTACTTCCTTGACCGGAGTAATCGTCAGTAACGTCTCCGACTGTAGATCTTATACCGCGATTTACGCGGCTTCGCTTTCCGATCAGTTTGGGCCTACTAACATCGGGACTGCTAAGTGTTTGTTCGGTCTCGATTTTTCGTCGGCTTCGGCTTCGAGCAGTAAGCACCACACCATTGTCATTGTACTTGTTACTGTTTTTGTTTTTCTAGGATTGTTATTTGTTGGTGGTTTCTGGGGTTATGTTAGATATAAGAAAAGAAAAAATGCAAATTGGAAGGGGAATGGTAATAGTAATAGAGATGAGATTATTTTAGGTTTGAGTTCGGATTTGGATAATATGAACCAGAGTACTACTTTGATTAGGTTTGGTTTCGATGAGATTAAGAAAGCAACTAGGAATTTTTCTAGGGATAATATAATTGGGAGTGGTGGTTATGGAAATGTTTATAAAGGGTTATTAAACGATGGTAGTGAAGTTGCGATGAAAAGGTTTAAGAATTGTTCGGTCGCTGGTGATGCGAGTTTTAAGCATGAAGTAGAAGTTATTGCGAGTGTTCGACATGTTAATCTTGTTGCTTTGAGAGGTTATTGTACTGCTACTACTAATTTAGAAGGTCATCAGAGGATTATTGTTACGGATTTGATGGAGAATGGGAGTCTTTATGATCATTTGTTTGGTTCTTCGAAGAAGAAATTGAGTTGGCCCATTCGTCAGAAGATTGCGCTTGGTACGGCTAGGGGTTTGGCGTATTTGCATTATGGTGCTCAGCCTTCGATTATTCATAGGGATATTAAAGCAAGTAATATACTTTTGGATGAGAAGTTTGAAGCGAAGGTGGCGGATTTTGGATTGGCGAAGTTCAATCCTGAGGGGATGACTCATATGAGTACTAGGGTAGCTGGAACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAGTTGACGGAGAGGAGTGACGTGTTTAGTTTCGGTGTTTTGCTTCTCGAGCTTTTGAGTGGGAGAAAGGCGCTTGAAACAAATCAGGATGGTCAACCGTCTGCTTTCAGCGACTTGGCTTGGTCGTTGGTTAGAAACAATAGGGCTATGGATGTTGTTGAAGATGGTATGCCAGAACCTGGCACACCGGAAATTCTTGAGAAGTATGTTCTGGTTGCTGTTTTATGTTCTCATCCACAGTTATATGCGAGGCCAACGATGGATCAGGTTGTTAAAATGTTGGAAACAGATGATGAACCAATGCCCTCGGTTGTTGAAAGGCCGATTCCTTTTATTTCAGGAAGACTTGATATCGAAAAATCTGCTAGCAGTAACTCAGGTCAGCTCTGCAGTCCAACTGGTTATCAGGCATATACAATGCAATTACAAAATCGTCGTGCTTCTACTTGTAATGAAGAAGATGAAGAAAACTCGGAGCGTGTTTCTAATTGTATGGAAGCAGAAGGAAACTCTGAACGTGTTTCGAATTGTAAGGAAGAGGACCGAAACTCTGAACGCGGGTCTGTAAGCAAAGATTGA 2001 0.4413 MSLLSTFFPSLFLLLIFPSFSFSATPCPLNITLLRVIGDGSRPSTTSDSQCHYILQALHLVQADYLHRTGLFVPPPNTSESCWSSFQSFIDEFQPNFDIRSSCGFQTSWISQGCMNITTKQQFEQQVSLPALRSLQSNCNVSLDNNSPCALCTGARSQVLTSLTGVIVSNVSDCRSYTAIYAASLSDQFGPTNIGTAKCLFGLDFSSASASSSKHHTIVIVLVTVFVFLGLLFVGGFWGYVRYKKRKNANWKGNGNSNRDEIILGLSSDLDNMNQSTTLIRFGFDEIKKATRNFSRDNIIGSGGYGNVYKGLLNDGSEVAMKRFKNCSVAGDASFKHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSSKKKLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVLLLELLSGRKALETNQDGQPSAFSDLAWSLVRNNRAMDVVEDGMPEPGTPEILEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDEPMPSVVERPIPFISGRLDIEKSASSNSGQLCSPTGYQAYTMQLQNRRASTCNEEDEENSERVSNCMEAEGNSERVSNCKEEDRNSERGSVSKD 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02499 666 Gene3D Phosphorylase Kinase; domain 1 265 373 - -
Vifa5g02499 666 MobiDBLite consensus disorder prediction 620 666 - -
Vifa5g02499 666 MobiDBLite consensus disorder prediction 622 636 - -
Vifa5g02499 666 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 138 627 - -
Vifa5g02499 666 SMART serkin_6 294 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02499 666 SUPERFAMILY Protein kinase-like (PK-like) 271 570 IPR011009 -
Vifa5g02499 666 Pfam Protein tyrosine and serine/threonine kinase 297 568 IPR001245 GO:0004672|GO:0006468
Vifa5g02499 666 Pfam SPARK 24 172 IPR043891 -
Vifa5g02499 666 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 256 373 - -
Vifa5g02499 666 Gene3D Transferase(Phosphotransferase) domain 1 375 578 - -
Vifa5g02499 666 ProSiteProfiles Protein kinase domain profile. 294 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02499 666 MobiDBLite consensus disorder prediction 646 666 - -
Vifa5g02499 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Vifa5g02499 666 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Vifa5g02499 666 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 375 576 - -
Vifa5g02499 666 CDD STKc_IRAK 300 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02499 Vifa-Chr5 829286239 829288239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02499 13 614 Receptor kinase-like Gene Family AT2G48010 59.241 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vifa5g02499 PK_Tyr_Ser-Thr 9.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02499 - - gmx:100786298 885.56