Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02496 ATGACTGGTACTAATCAAATCAACCCTAGTGAATCCAGGAGTGTTGTTCCTTTGAATACGTATGTGCTCATTTCAAATTTCAAGCTTGCTTACAATCTTCTGCGACGAGCAGATGGGACGTTCAACCGAGACTTAGCAGAGTTTCTGGACAGAAAAGTGTCGGCAAACGCGATTCCGGTTGACGGGGTGTTTTCGTTTGATCATGTAGATCAAAACAGCGGTCTATTCAACCGAGTTTATCTACCGTCTTGGGTGAATGAATCTGAATGGGGTGTCATAGATTTGGAGAAACCACTGAGTTCAACGGAAATTGTACCTGTTATAATATTCTTTCATGGAGGAAGCTTTTCTCATTCATCTCCAAACAGTGCTATCTACGACACGTTTTGTAGAAGGCTGGTGAGCCTTTGTAAAGCCGCGGTTGTTTCGGTTAATTACCGAAGATCGCCGGAGCATCGGTTTCCATGTTGTTATGAGGATGGTTGGAATGCACTCAAATGGGTGAAATCAAGAAAATGGCTTCGAAGTGGGAAAGACAAAAAAATTTATGTTTACATGGCGGGTGATAGTTCAGGTGGGAACATTGTTCATCATGTAGCGGTTAAAGCTTCCGAGGAAAAAATCCATGTTTTAGGGAACATTCTTCTTCATCCATTGTTTGGTGGTGAAAAGAGAACAGAATCTGAGGTTAGATTAGATGGAAAGTACTTTGTTAGATTGCAAGACCGTGATTGGTATTGGAGAGCTTTTTTACCAGAAGGTGAAGATAGAGATCACCCTGCTTGTAACCCGTTTGGTCCTAAAGGGGTAAAAAACCTAAAAGGACTTGAGAATTTTCCTAAAACTCTTGTTTGTGTTGCTGGTTTGGATCTTTTACAAGATTGGCAATTGGCTTATGTGGAAGGTTTGAGGAGTTTTGCTCAACAGGTTAAGCTTCTATTCCTTAAGGAGGCTACTATTGGATTTTACTTCTTGCCTAATAATGATCATTTCTATGTCCTTATGGAGGAAATCAAGAACTTTGTTAATCCTAATTGTTAA 1041 0.4035 MTGTNQINPSESRSVVPLNTYVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVSANAIPVDGVFSFDHVDQNSGLFNRVYLPSWVNESEWGVIDLEKPLSSTEIVPVIIFFHGGSFSHSSPNSAIYDTFCRRLVSLCKAAVVSVNYRRSPEHRFPCCYEDGWNALKWVKSRKWLRSGKDKKIYVYMAGDSSGGNIVHHVAVKASEEKIHVLGNILLHPLFGGEKRTESEVRLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPKGVKNLKGLENFPKTLVCVAGLDLLQDWQLAYVEGLRSFAQQVKLLFLKEATIGFYFLPNNDHFYVLMEEIKNFVNPNC 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02496 346 Pfam alpha/beta hydrolase fold 108 323 IPR013094 GO:0016787
Vifa5g02496 346 SUPERFAMILY alpha/beta-Hydrolases 73 343 IPR029058 -
Vifa5g02496 346 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 184 196 IPR033140 -
Vifa5g02496 346 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 108 124 IPR002168 GO:0016787
Vifa5g02496 346 Gene3D alpha/beta hydrolase 1 343 IPR029058 -
Vifa5g02496 346 FunFam Gibberellin receptor GID1 1 344 - -
Vifa5g02496 346 PANTHER ARYLACETAMIDE DEACETYLASE 43 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02496 Vifa-Chr5 827489668 827490817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02496 1 343 Carbohydrate Esterase AT3G63010 70.640 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02496 K14493 - cit:102618248 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02496 5 827489668 827490817 Vifa5g02496 5 827489668 827490817 ECH
Vifa5g02496 5 827489668 827490817 Vifa3g02267 3 572569424 572571190 ECH
Vifa5g02496 5 827489668 827490817 Vifa3g02267 3 572569424 572571190 PCT