Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02488 ATGTTGTGTTGCGGAGGATCAGAAGAAGAGACCAGCGGCCCGCCTGCAAACCAATACACTGCACCGTCAAGAGGGGGTAACAACGCGTATGGTGGAGGTGGAGGCAATGATAGAGGAGAGCCTAGGAGCAACATTACCAAGAGTGGTGGACCGCAGAAAGTATTACCGATTGAGATACCGTCGATAACGTTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATTGGTGAAGGTTCCTATGGAAGGGTTTACTACGCGAAATTGAGTAATGGTACTGAAGCTGCTATTAAAAAGTTAGATACCAGTTCTTCGCCTGATCCTGACACGGATTTTGCAGCTCAGTTATCAGTTGTTTCGAGACTCAAGCATGACAATTTTGTGGAGTTGACTGGTTATTGTTTAGAAGCAGACAACAGAATTTTGGTTTATCAATTTGCAAGTTTGGGTTCTTTGCATGATGTATTACACGGAAGGAAGGGTGTACAAGGTGCAGAACCCGGCCCAGTTTTAAGCTGGAACCAAAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGCCTAGAGTTTCTTCACGAAAAAGTTCAGCCTTCTATAGTTCATCGCGATGTTCGATCCAGTAATGTGTTGCTGTTCAATGAGTATGAAGCCAAGATTGCTGATTTCAGCTTGACGAATCAGTCGTCTGACACTGCAGCTCGGCTACATTCTACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGGCAGATAACACAAAAAAGTGACGTGTATAGTTTCGGAGTTGTGCTTTTAGAACTCTTGACCGGAAGAAAGCCGGTAGACCATACGATGCCTAAAGGGCAACAAAGTCTTGTGACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCTCCAAAGGCAATTGCTAAGTTGGCAGCTGTAGCAGCACTGTGTGTTCAGTATGAAGCTGATTTTCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATGCAAAACCACCTGGTCCTGAATCTAATGCTTGA 1104 0.4438 MLCCGGSEEETSGPPANQYTAPSRGGNNAYGGGGGNDRGEPRSNITKSGGPQKVLPIEIPSITLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSNGTEAAIKKLDTSSSPDPDTDFAAQLSVVSRLKHDNFVELTGYCLEADNRILVYQFASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNEYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPESNA 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02488 367 SMART tyrkin_6 74 352 IPR020635 GO:0004713|GO:0006468
Vifa5g02488 367 MobiDBLite consensus disorder prediction 1 53 - -
Vifa5g02488 367 MobiDBLite consensus disorder prediction 11 25 - -
Vifa5g02488 367 Pfam Protein tyrosine and serine/threonine kinase 78 352 IPR001245 GO:0004672|GO:0006468
Vifa5g02488 367 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 2 360 - -
Vifa5g02488 367 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Vifa5g02488 367 FunFam probable protein kinase At2g41970 47 150 - -
Vifa5g02488 367 Gene3D Phosphorylase Kinase; domain 1 48 150 - -
Vifa5g02488 367 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Vifa5g02488 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 202 214 IPR008266 GO:0004672|GO:0006468
Vifa5g02488 367 Gene3D Transferase(Phosphotransferase) domain 1 152 361 - -
Vifa5g02488 367 ProSiteProfiles Protein kinase domain profile. 74 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa5g02488 367 FunFam PTI1-like tyrosine-protein kinase 3 152 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02488 Vifa-Chr5 822875466 822877416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02488 38 359 Receptor kinase-like Gene Family AT3G58690 43.558 8.04e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vifa5g02488 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02488 - - gmx:100812507 649.047