Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g02488 | ATGTTGTGTTGCGGAGGATCAGAAGAAGAGACCAGCGGCCCGCCTGCAAACCAATACACTGCACCGTCAAGAGGGGGTAACAACGCGTATGGTGGAGGTGGAGGCAATGATAGAGGAGAGCCTAGGAGCAACATTACCAAGAGTGGTGGACCGCAGAAAGTATTACCGATTGAGATACCGTCGATAACGTTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTCATTGGTGAAGGTTCCTATGGAAGGGTTTACTACGCGAAATTGAGTAATGGTACTGAAGCTGCTATTAAAAAGTTAGATACCAGTTCTTCGCCTGATCCTGACACGGATTTTGCAGCTCAGTTATCAGTTGTTTCGAGACTCAAGCATGACAATTTTGTGGAGTTGACTGGTTATTGTTTAGAAGCAGACAACAGAATTTTGGTTTATCAATTTGCAAGTTTGGGTTCTTTGCATGATGTATTACACGGAAGGAAGGGTGTACAAGGTGCAGAACCCGGCCCAGTTTTAAGCTGGAACCAAAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGCCTAGAGTTTCTTCACGAAAAAGTTCAGCCTTCTATAGTTCATCGCGATGTTCGATCCAGTAATGTGTTGCTGTTCAATGAGTATGAAGCCAAGATTGCTGATTTCAGCTTGACGAATCAGTCGTCTGACACTGCAGCTCGGCTACATTCTACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGGCAGATAACACAAAAAAGTGACGTGTATAGTTTCGGAGTTGTGCTTTTAGAACTCTTGACCGGAAGAAAGCCGGTAGACCATACGATGCCTAAAGGGCAACAAAGTCTTGTGACTTGGGCAACTCCAAGGTTGAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTACCCTCCAAAGGCAATTGCTAAGTTGGCAGCTGTAGCAGCACTGTGTGTTCAGTATGAAGCTGATTTTCGGCCAAACATGACAATTGTTGTCAAAGCTCTTCAGCCACTTCTCAATGCAAAACCACCTGGTCCTGAATCTAATGCTTGA | 1104 | 0.4438 | MLCCGGSEEETSGPPANQYTAPSRGGNNAYGGGGGNDRGEPRSNITKSGGPQKVLPIEIPSITLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSNGTEAAIKKLDTSSSPDPDTDFAAQLSVVSRLKHDNFVELTGYCLEADNRILVYQFASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNEYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPPGPESNA | 367 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g02488 | 367 | SMART | tyrkin_6 | 74 | 352 | IPR020635 | GO:0004713|GO:0006468 | |
Vifa5g02488 | 367 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Vifa5g02488 | 367 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Vifa5g02488 | 367 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 352 | IPR001245 | GO:0004672|GO:0006468 | |
Vifa5g02488 | 367 | PANTHER | PTO-INTERACTING PROTEIN 1-LIKE | 2 | 360 | - | - | |
Vifa5g02488 | 367 | SUPERFAMILY | Protein kinase-like (PK-like) | 53 | 352 | IPR011009 | - | |
Vifa5g02488 | 367 | FunFam | probable protein kinase At2g41970 | 47 | 150 | - | - | |
Vifa5g02488 | 367 | Gene3D | Phosphorylase Kinase; domain 1 | 48 | 150 | - | - | |
Vifa5g02488 | 367 | ProSitePatterns | Protein kinases ATP-binding region signature. | 80 | 103 | IPR017441 | GO:0005524 | |
Vifa5g02488 | 367 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 202 | 214 | IPR008266 | GO:0004672|GO:0006468 | |
Vifa5g02488 | 367 | Gene3D | Transferase(Phosphotransferase) domain 1 | 152 | 361 | - | - | |
Vifa5g02488 | 367 | ProSiteProfiles | Protein kinase domain profile. | 74 | 356 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vifa5g02488 | 367 | FunFam | PTI1-like tyrosine-protein kinase 3 | 152 | 361 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g02488 | Vifa-Chr5 | 822875466 | 822877416 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g02488 | 38 | 359 | Receptor kinase-like Gene Family | AT3G58690 | 43.558 | 8.04e-85 | 261 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_RLCK-VIII | Vifa5g02488 | PK_Tyr_Ser-Thr | 1.2e-45 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g02488 | - | - | gmx:100812507 | 649.047 |