Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02487 ATGGCTCCTGGAGGCAGCATTTTCAAAGAAGTTCTGGAGTCTCACCTGATGTCTTCGTCGGATTATGAGACCGGAAAGGCTAAATCTGAGGCCAAGATTAACAGTACACTTACAAAATCTACTAGCGCTGGGTTGAATGGAAGGAACGGAACTAGTTCGAAGAATGGCGTGCACGACTTACTTGGTTGCCCTGTCTGCAAGAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGCTCGAGTTGCAAGATTGAAGTCCATAATCTCTGCCCAACATGTCATCATGATCTTGGGAATATAAGGTGTTTGGCTTTGGAGAAAGTGGCCGAATCTTTGGAGCTTCCTTGCCGATATCAGAGTCTAGGTTGTAATGATATTTTCCCTTACTATGCTAAGCTTAAACATGAGCAAAGTTGCGGGTTTCGACCATACAATTGCCCCTATGCCGGATCTGAGTGTTCTGTGATGGGTGACATTCCAACTCTCGTTGCTCATCTCAAGGACGAACACAAGGTTGACATGCACGATGGATTCACCTTCAATCACCGATATGTCAAAACAAATCCACATGAAGTTGAAAATGCCACATGGATGCTAACCGTTTTCAATTGTTACGGGCGACATTTCTGCTTGCACTTTGAGGCTTTCCAGCTTGGCACAGCTCCAGTTTTCATGGCCTTCTTACGGTTCATGGGCGATGACAATGAAGAGAAAAAGTTCAGCTACAGTTTAGAAGTCGGTGCAAACGGGCGCAAACTTATATGGCAAGGAATTCCACGGAGCATTCGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTTATAATTCAGAGAAATCAAGCCCTTTATTTTTCAGGTGGCGATAAACAGGAGTTGAAGTTGAGAATCACGGGTCGAATATGGAAAGAAGATTGA 936 0.4391 MAPGGSIFKEVLESHLMSSSDYETGKAKSEAKINSTLTKSTSAGLNGRNGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSSCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQSCGFRPYNCPYAGSECSVMGDIPTLVAHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGRHFCLHFEAFQLGTAPVFMAFLRFMGDDNEEKKFSYSLEVGANGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02487 311 FunFam E3 ubiquitin-protein ligase SINAT3 115 171 - -
Vifa5g02487 311 Pfam Seven in absentia protein family 105 304 IPR018121 GO:0005737|GO:0006511|GO:0007275
Vifa5g02487 311 SUPERFAMILY RING/U-box 56 105 - -
Vifa5g02487 311 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 304 IPR008974 GO:0005515
Vifa5g02487 311 ProSiteProfiles Zinc finger RING-type profile. 63 99 IPR001841 -
Vifa5g02487 311 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 114 - -
Vifa5g02487 311 SUPERFAMILY TRAF domain-like 116 308 - -
Vifa5g02487 311 CDD RING-HC_SIAHs 61 99 - -
Vifa5g02487 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 115 IPR013083 -
Vifa5g02487 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 169 IPR013083 -
Vifa5g02487 311 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 310 - -
Vifa5g02487 311 ProSiteProfiles Zinc finger SIAH-type profile. 116 176 IPR013010 GO:0008270
Vifa5g02487 311 FunFam E3 ubiquitin-protein ligase SINAT5-like 172 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02487 Vifa-Chr5 822745278 822746426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02487 1 311 C3H Transcription Factor Family AT2G41980 77.814 0.0 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02487 K04506 - gmx:100813966 588.956