Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g02483 | ATGGGGGAGGAAAGTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCACCAACTGGGTCTATAACCAATGAGGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGTGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGGATTCTGCCTCAGCCTTATGCTCAAGTTCATCAGATTATACCTGAAACTGCGCATCATATTTATATCCCGCCTGAAGCTCGCAATATCTCTGTTGAATTGAACAATTTTTTGGTGAATTCGGGTAATGGGACTGGGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGAGCCGTTGAAAGCGTGTGAGAATAACAATGGGGTTATGGAGGATGAGATGTCGCAGAAGAAGGACGATGTTGAAAAGACTGGTGGCTGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACTTGTCCAAGGAGCCTGTTTTGACTTGTTGCGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGCGAGGTGACAATTAAGAGTATTACCCCCATATATGGCCGTGGGAACAATGCTCGTGTTCTTGAGGAGGATTCTACTCTTAAGATTCCTCCTAGGCCACAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAATGCATCTGCACTACCTGTAGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTAGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGATTCCTGTGGCTCCACCGGAAGATGTTGCAGGTTTGAATCAGAGCAACGTTAATGGTGCTGACTTGGGAGGGGATAACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGGTTGGTCGAGGCATATTTTCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTACTTCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCCGCAGTCATAAACTCGGAGAGTCAAGTGGACACTGCCGTAGAAATTGATTCCATGGTAACCTCTTCTCGGAGGAGAGCTGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCTAGGCGCAGACGTCTGAACTAA | 1368 | 0.4635 | MGEESSDAMNLDLNLGPDPEPPTGSITNEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRILPQPYAQVHQIIPETAHHIYIPPEARNISVELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEEPLKACENNNGVMEDEMSQKKDDVEKTGGCDGDFFDCNICLDLSKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSITPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEMIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQIPVAPPEDVAGLNQSNVNGADLGGDNRRVQSLLLRRSQSHRATLSSLSSALTSAERLVEAYFRSNPLGRNQEQPPTSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRADASRLSDVDSGDSRAPRRRRLN | 455 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g02483 | 455 | ProSitePatterns | Zinc finger RING-type signature. | 189 | 198 | IPR017907 | - | |
Vifa5g02483 | 455 | CDD | RING-HC_RNF5-like | 172 | 215 | - | - | |
Vifa5g02483 | 455 | MobiDBLite | consensus disorder prediction | 426 | 455 | - | - | |
Vifa5g02483 | 455 | SMART | ring_2 | 174 | 214 | IPR001841 | - | |
Vifa5g02483 | 455 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 215 | IPR001841 | - | |
Vifa5g02483 | 455 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 143 | 323 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vifa5g02483 | 455 | Pfam | Zinc finger, C3HC4 type (RING finger) | 174 | 214 | - | - | |
Vifa5g02483 | 455 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vifa5g02483 | 455 | Coils | Coil | 140 | 160 | - | - | |
Vifa5g02483 | 455 | SUPERFAMILY | RING/U-box | 170 | 227 | - | - | |
Vifa5g02483 | 455 | MobiDBLite | consensus disorder prediction | 427 | 455 | - | - | |
Vifa5g02483 | 455 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 242 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g02483 | Vifa-Chr5 | 820454592 | 820455959 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g02483 | 1 | 446 | C3H Transcription Factor Family | AT3G58030 | 50.972 | 4.30e-133 | 389 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g02483 | K10666 | - | gmx:100811099 | 633.254 |