Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02483 ATGGGGGAGGAAAGTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCACCAACTGGGTCTATAACCAATGAGGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGTGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGGATTCTGCCTCAGCCTTATGCTCAAGTTCATCAGATTATACCTGAAACTGCGCATCATATTTATATCCCGCCTGAAGCTCGCAATATCTCTGTTGAATTGAACAATTTTTTGGTGAATTCGGGTAATGGGACTGGGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGAGCCGTTGAAAGCGTGTGAGAATAACAATGGGGTTATGGAGGATGAGATGTCGCAGAAGAAGGACGATGTTGAAAAGACTGGTGGCTGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACTTGTCCAAGGAGCCTGTTTTGACTTGTTGCGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGCGAGGTGACAATTAAGAGTATTACCCCCATATATGGCCGTGGGAACAATGCTCGTGTTCTTGAGGAGGATTCTACTCTTAAGATTCCTCCTAGGCCACAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAATGCATCTGCACTACCTGTAGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTAGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGATTCCTGTGGCTCCACCGGAAGATGTTGCAGGTTTGAATCAGAGCAACGTTAATGGTGCTGACTTGGGAGGGGATAACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGGTTGGTCGAGGCATATTTTCGTAGCAATCCATTAGGCAGAAACCAAGAACAACCACCTACTTCAGTTGATGACAGAGATTCCTTTTCAAGCATTGCCGCAGTCATAAACTCGGAGAGTCAAGTGGACACTGCCGTAGAAATTGATTCCATGGTAACCTCTTCTCGGAGGAGAGCTGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCTAGGCGCAGACGTCTGAACTAA 1368 0.4635 MGEESSDAMNLDLNLGPDPEPPTGSITNEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRILPQPYAQVHQIIPETAHHIYIPPEARNISVELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEEPLKACENNNGVMEDEMSQKKDDVEKTGGCDGDFFDCNICLDLSKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSITPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEMIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQIPVAPPEDVAGLNQSNVNGADLGGDNRRVQSLLLRRSQSHRATLSSLSSALTSAERLVEAYFRSNPLGRNQEQPPTSVDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRADASRLSDVDSGDSRAPRRRRLN 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02483 455 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Vifa5g02483 455 CDD RING-HC_RNF5-like 172 215 - -
Vifa5g02483 455 MobiDBLite consensus disorder prediction 426 455 - -
Vifa5g02483 455 SMART ring_2 174 214 IPR001841 -
Vifa5g02483 455 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Vifa5g02483 455 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 143 323 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa5g02483 455 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
Vifa5g02483 455 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g02483 455 Coils Coil 140 160 - -
Vifa5g02483 455 SUPERFAMILY RING/U-box 170 227 - -
Vifa5g02483 455 MobiDBLite consensus disorder prediction 427 455 - -
Vifa5g02483 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 242 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02483 Vifa-Chr5 820454592 820455959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02483 1 446 C3H Transcription Factor Family AT3G58030 50.972 4.30e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02483 K10666 - gmx:100811099 633.254