Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa5g02482 | ATGGGGGAGGAAAGTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCACCAACTGGGTCTATAACCAATGAGGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGTGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGGATTCTGCCTCAGCCTTATGCTCAAGTTCATCAGATTATACCTGAAACTGCGCATCATATTTATATCCCGCCTGAAGCTCGCAATATCTCTGTTGAATTGAACAATTTTTTGGTGAATTCGGGTAATGGGACTGGGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGAGCCGTTGAAAGCGTGTGAGAATAACAATGGGGTTATGGAGGATGAGATGTCGCAGAAGAAGGACGATGTTGAAAAGACTGGTGGCTGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACTTGTCCAAGGAGCCTGTTTTGACTTGTTGCGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGCGAGGTGACAATTAAGAGTATTACCCCCATATATGGCCGTGGGAACAATGCTCGTGTTCTTGAGGAGGATTCTACTCTTAAGATTCCTCCTAGGCCACAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAATGCATCTGCACTACCTGTAGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTAGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGATTCCTGTGGCTCCACCGGAAGATGTTGCAGGTTTGAATCAGAGCAACGTTAATGGTGCTGACTTGGGAGGGGATAACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGTTGA | 1128 | 0.4619 | MGEESSDAMNLDLNLGPDPEPPTGSITNEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRILPQPYAQVHQIIPETAHHIYIPPEARNISVELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEEPLKACENNNGVMEDEMSQKKDDVEKTGGCDGDFFDCNICLDLSKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSITPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEMIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQIPVAPPEDVAGLNQSNVNGADLGGDNRRVQSLLLRRSQSHRATLSSLSSALTSAES | 375 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa5g02482 | 375 | ProSitePatterns | Zinc finger RING-type signature. | 189 | 198 | IPR017907 | - | |
Vifa5g02482 | 375 | MobiDBLite | consensus disorder prediction | 325 | 344 | - | - | |
Vifa5g02482 | 375 | CDD | RING-HC_AtRMA-like | 172 | 215 | - | - | |
Vifa5g02482 | 375 | SUPERFAMILY | RING/U-box | 170 | 227 | - | - | |
Vifa5g02482 | 375 | SMART | ring_2 | 174 | 214 | IPR001841 | - | |
Vifa5g02482 | 375 | ProSiteProfiles | Zinc finger RING-type profile. | 174 | 215 | IPR001841 | - | |
Vifa5g02482 | 375 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 143 | 291 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Vifa5g02482 | 375 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Vifa5g02482 | 375 | Coils | Coil | 140 | 160 | - | - | |
Vifa5g02482 | 375 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 242 | IPR013083 | - | |
Vifa5g02482 | 375 | Pfam | Zinc finger, C3HC4 type (RING finger) | 174 | 214 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa5g02482 | Vifa-Chr5 | 820454592 | 820455784 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa5g02482 | 1 | 374 | C3H Transcription Factor Family | AT3G58030 | 46.736 | 2.36e-97 | 295 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa5g02482 | K10666 | - | gmx:100811099 | 501.901 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa5g02482 | 5 | 820454592 | 820455784 | Vifa5g02482 | 5 | 820454592 | 820455784 | ECH |