Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02482 ATGGGGGAGGAAAGTTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCAGACCCGGAACCACCAACTGGGTCTATAACCAATGAGGCTTTGAACTTGGATGATTGGATTGAGGAGCCTCTTCAGCGAATTAGTGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTCCGATTTCTCCACCTTATCCTCAACAAGTTCATCGGATTCTGCCTCAGCCTTATGCTCAAGTTCATCAGATTATACCTGAAACTGCGCATCATATTTATATCCCGCCTGAAGCTCGCAATATCTCTGTTGAATTGAACAATTTTTTGGTGAATTCGGGTAATGGGACTGGGTTACAGGCTGGGGAAGGAAGTGTGGCGGCTGTGGAGAGAATGGAGGAAGAGGAGGAGCCGTTGAAAGCGTGTGAGAATAACAATGGGGTTATGGAGGATGAGATGTCGCAGAAGAAGGACGATGTTGAAAAGACTGGTGGCTGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACTTGTCCAAGGAGCCTGTTTTGACTTGTTGCGGTCATCTGTTTTGTTGGCAGTGCCTATATCGATGGTTGCATCTGCATTCAGATGCTAAGGAGTGTCCAGTTTGCAAGGGCGAGGTGACAATTAAGAGTATTACCCCCATATATGGCCGTGGGAACAATGCTCGTGTTCTTGAGGAGGATTCTACTCTTAAGATTCCTCCTAGGCCACAAGCAAAGCGTGTTGAAAGTCTGAGACAAACCATTATGAGAAATGCATCTGCACTACCTGTAGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATCTCACTAGGGATCTAGTTCAGCCAAATGAAACAGAAAATGCCCGTGGAACAGTAGAGAGAACTACTTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGAGGAGAGAGCAGATTCCTGTGGCTCCACCGGAAGATGTTGCAGGTTTGAATCAGAGCAACGTTAATGGTGCTGACTTGGGAGGGGATAACCGCAGGGTGCAATCTCTTTTGCTTCGAAGATCACAATCACATAGAGCAACACTTTCTAGTCTTTCATCAGCATTGACTTCTGCTGAAAGTTGA 1128 0.4619 MGEESSDAMNLDLNLGPDPEPPTGSITNEALNLDDWIEEPLQRISEAAARLRGRQRWRWRQLPISPPYPQQVHRILPQPYAQVHQIIPETAHHIYIPPEARNISVELNNFLVNSGNGTGLQAGEGSVAAVERMEEEEEPLKACENNNGVMEDEMSQKKDDVEKTGGCDGDFFDCNICLDLSKEPVLTCCGHLFCWQCLYRWLHLHSDAKECPVCKGEVTIKSITPIYGRGNNARVLEEDSTLKIPPRPQAKRVESLRQTIMRNASALPVEEMIRRLGNRIDLTRDLVQPNETENARGTVERTTSLLSRFLTSRGMRREQIPVAPPEDVAGLNQSNVNGADLGGDNRRVQSLLLRRSQSHRATLSSLSSALTSAES 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02482 375 ProSitePatterns Zinc finger RING-type signature. 189 198 IPR017907 -
Vifa5g02482 375 MobiDBLite consensus disorder prediction 325 344 - -
Vifa5g02482 375 CDD RING-HC_AtRMA-like 172 215 - -
Vifa5g02482 375 SUPERFAMILY RING/U-box 170 227 - -
Vifa5g02482 375 SMART ring_2 174 214 IPR001841 -
Vifa5g02482 375 ProSiteProfiles Zinc finger RING-type profile. 174 215 IPR001841 -
Vifa5g02482 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 143 291 IPR045103 GO:0005783|GO:0006511|GO:0061630
Vifa5g02482 375 MobiDBLite consensus disorder prediction 1 23 - -
Vifa5g02482 375 Coils Coil 140 160 - -
Vifa5g02482 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 242 IPR013083 -
Vifa5g02482 375 Pfam Zinc finger, C3HC4 type (RING finger) 174 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02482 Vifa-Chr5 820454592 820455784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02482 1 374 C3H Transcription Factor Family AT3G58030 46.736 2.36e-97 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02482 K10666 - gmx:100811099 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02482 5 820454592 820455784 Vifa5g02482 5 820454592 820455784 ECH