Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02474 ATGACGACGGAAGCGATAGAATCTCTCGGTTCTCTCAACGGCGATTTCGGCTTCACCGGCACCAGCGATCGGAGGTTCGCCTTTTCACGCCAACCTTCTTTCCAACAACCCCGCACACCGATTTCCACCGATTCAACTGATTTCAGTTTCAGAAAACCCTTTCTTTCACGAACTGATTCCAGCATAGACATCCCCTCTTCTGGACCGCACCACCACTACTGGTCCGGCCATGACGATAAACCGTCCGGCTCGCCGCGGAAACCATCGTTTTTGTCGTTTGTTTTCTCCTTTTTTCGAAATGTTAGGGCTGGGCATAGGTATATGAAGAGATTGTTTTTTATGATCTCGCTTAATGTGGCTTACTCTACTGTTGAGTTGCTCATTGGCCTCTTCACTGGCCGTGTTGGTCTGGTGTCTGATGCAGTTCATTTGACATTTGGATGTGGTCTTCTCACGTTTTCATTGTTTGTTATGGGCGCGTCTAGGAAAAAACCTGATGGGGTTTATACTTATGGGTATAAAAGACTAGAAGTCTTGTCTGCATTTACAAATGCTCTGTTTCTTTTGTTTATGTCATTCTCCCTAGCAGTTGAAGCACTTCATGCATTTGTACAAGATGAATCAGAACACAAGCATTACTTGAATGTTTCTGCAGTGGCCAATTTATTTGTGAATCTCATTGGCGTGTGGTTCTTTAGGAACTATGCTCGGATAAATCTTGCATACAGAAATGCAGAAGATATGAATTGCCACTCTGTTTTCCTACATGTTCTTACAGATTCCATTCGCAGTGCAGGTTTGATATTGGCATCCTGGCTATTGTCCATAGGGGTTGAGAATGCAGAAGTGTTGTGTTTGGGGCTCGTTTCTGTTGCAGTTTTTACTCTAGTTTTGCCTCTCTTTAGGGCCACTGGTGGTATCTTGCTCCAAATGGCACCTCCCAGCATCCCAACTACTGCTTTTAGCAAATGCTTGAGACAGATTTCTGCTCGGGAAGATGTACTGGAAGTATCGCAGGCCCGTTTTTGGGAATTGGTGCCCGGTCGTGTGGTTGGTTCGCTGTCAATGCAGGTAAAGAAAGGAGTGGATGATCGGCCAATACTAGAATTTGTTCATCGTCTATACCATGATTTTGGTGTGCAGGACCTCACGGTGCAGATTGATTATGCATGA 1173 0.451 MTTEAIESLGSLNGDFGFTGTSDRRFAFSRQPSFQQPRTPISTDSTDFSFRKPFLSRTDSSIDIPSSGPHHHYWSGHDDKPSGSPRKPSFLSFVFSFFRNVRAGHRYMKRLFFMISLNVAYSTVELLIGLFTGRVGLVSDAVHLTFGCGLLTFSLFVMGASRKKPDGVYTYGYKRLEVLSAFTNALFLLFMSFSLAVEALHAFVQDESEHKHYLNVSAVANLFVNLIGVWFFRNYARINLAYRNAEDMNCHSVFLHVLTDSIRSAGLILASWLLSIGVENAEVLCLGLVSVAVFTLVLPLFRATGGILLQMAPPSIPTTAFSKCLRQISAREDVLEVSQARFWELVPGRVVGSLSMQVKKGVDDRPILEFVHRLYHDFGVQDLTVQIDYA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02474 390 FunFam Metal tolerance protein C2 107 308 - -
Vifa5g02474 390 NCBIfam cation diffusion facilitator family transporter 108 388 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vifa5g02474 390 PANTHER - 87 389 IPR045316 GO:0005385|GO:0006829|GO:0006882
Vifa5g02474 390 Gene3D Cation efflux protein transmembrane domain 107 308 IPR027469 -
Vifa5g02474 390 Pfam Cation efflux family 111 309 IPR002524 GO:0006812|GO:0008324|GO:0016020|GO:0055085
Vifa5g02474 390 SUPERFAMILY Cation efflux protein transmembrane domain-like 106 310 IPR027469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02474 Vifa-Chr5 818650699 818661694 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02474 108 388 Inorganic Solute Cotransporters AT3G61940 19.870 2.90e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02474 K14692 - gmx:100809496 591.652