Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02470 ATGAGTCTGTTTCTAAAATGTATACTTTTCGGGATCTCGATCCCTTACAAAATGTATCACGTTAGCACTGAAACGTTTAATAATGACCCTTTCGCGAGATCGATGAGACTTGATAGGCATTACTGTGGCGAATTTTCCATGGCTGCAGTTCAGTCAAATGAGGATATGGAAGATCACAGCCATGTTGATGTTGGCCATGATGCACTCTTTGTTGGAATTTATGATGGCTTTAAAGGCGACACCGCAGCCATCTATATCCGTAAACACATGTTTAAGGCTCTATTGAGGCGTATTACAGAGAATAATAACAATATGACTGTGACTATTTTGAGGGAAGTTGTTGAGGAAATCGAAAACGGGTTTATGGAGTTTGCTAGAAGTAGTTTTGAGCATCAACATCAGGAACAGATAGGTTTAGTTAGTTCAGGTTGTTTGATTTGTATTATATGGAGAGGGACACTATATCTTGCCAATGTTGGAGACTCGCGCGCTGTACTTGGTTCTCGGAGGGGTGTGGGTCCTTTTAAAAGATTGTGTGTGAAGCAAATGGTCAGAGTTCACAATTGTGAAAATTCGGATATTAGAAAAGAACTTCGTACATGGCATCCAGATGATAATCTTATTTACGAACTAAATGAATTACGCGATGAGGTGCATTCTCATATTTGCAAAGGTCGAATATGGACTATGAAAGGCTTAATCCAGACAAGCAGATGTATAGGATATGCATACATGAAGAAGGTTCCGTTTACTCAAAGGAGAACGTTCAAAATCCCAATGGGAGAACAAGTTGTTTCGGCTTTTTCAAGACCTTTGCTAACATCAGAACCAGAAGTTTATTCAAGAGTCTTAAAAGACACTGATAGTTTCATTATATTTGGATCTAGCGGATTTTGGAAATTGATGTCAAACGAGCTTGCTGCTAGAATTGTTAACACCAGTCCACAAGATAATATTGCGAAAATACTTGCCACGGTTGCTATAGAGAAGGGGGCTAATGAAAAAAGGAAAAAATACAGTGACGTTATAGAGATTCCGAAGGGAAGTGGTGTTAGTGGAGATTTTGGTTGTGTACATGACAGAATTAGACCGTTTTACCATGATGATATCACTGTGATCGTTGTATTTTTCAACAACGGGCCGAGTGGTGTGAGGCCTGAGATCAAGTCTTATACTTGCAATGATTATGCAGATCTACCATCAGAGTTTACATATTTCTATAACAAAACGAATGTGTGA 1239 0.389 MSLFLKCILFGISIPYKMYHVSTETFNNDPFARSMRLDRHYCGEFSMAAVQSNEDMEDHSHVDVGHDALFVGIYDGFKGDTAAIYIRKHMFKALLRRITENNNNMTVTILREVVEEIENGFMEFARSSFEHQHQEQIGLVSSGCLICIIWRGTLYLANVGDSRAVLGSRRGVGPFKRLCVKQMVRVHNCENSDIRKELRTWHPDDNLIYELNELRDEVHSHICKGRIWTMKGLIQTSRCIGYAYMKKVPFTQRRTFKIPMGEQVVSAFSRPLLTSEPEVYSRVLKDTDSFIIFGSSGFWKLMSNELAARIVNTSPQDNIAKILATVAIEKGANEKRKKYSDVIEIPKGSGVSGDFGCVHDRIRPFYHDDITVIVVFFNNGPSGVRPEIKSYTCNDYADLPSEFTYFYNKTNV 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02470 412 Gene3D - 22 380 IPR036457 -
Vifa5g02470 412 SMART PP2C_4 20 375 IPR001932 -
Vifa5g02470 412 Pfam Protein phosphatase 2C 68 334 IPR001932 -
Vifa5g02470 412 ProSiteProfiles PPM-type phosphatase domain profile. 41 377 IPR001932 -
Vifa5g02470 412 CDD PP2Cc 56 377 IPR001932 -
Vifa5g02470 412 SUPERFAMILY PP2C-like 35 379 IPR036457 -
Vifa5g02470 412 PANTHER PROTEIN PHOSPHATASE 35 375 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02470 Vifa-Chr5 817733343 817734677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02470 34 408 PP2C-type Phosphatase Gene Family AT5G06750 36.745 4.89e-76 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02470 K01102 - psat:127131157 376.326