Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02469 ATGAAGCTGTTTCTAAAATATCAACTTTTCGGGATCCCGTTCCCTTTCAATAAAACTTATCGCGTCAGCACTGAAACTTTTAATGCTGACCCTTTAGCGAGGTCGATGAATCTTGAAAGGCATTACAGCGGCGAATTCTCCATGGCTTCAGTTCAGTCAAATAAGGATTTGGAAGATCAAAACCAAGTTGATGTTAGCCATGATGCACTCTTTGTTGGAATTTATGATGGCTTTAAAGGCAACAGCGCTGCCCTCTATATCCGTAGAAACATCTTTAGGGCCCTATTGAGGCGTATTGAGCTGAATGATAACCATATGACTGTGAATATTTTGAGGGAAGTTGTTGCGGAAATCGAAAATGGATTTCAAGACTTTGCTAGAAATATTTACGAGGAAAATCATCAAGAGGTAAAGATAGGTTTAGTTAGTTCAGGTTGTTTGATTTGTATTATATGGAAAGGCATACTGTATCTTGCCAATGTTGGAAACTCGCGCGCTGTACTTGGTTCTATTAAGGGAGATAGGTATAAAAGATTGCGCGTAATGCAAATGGTTAGAGATCATAGTTGTGAAAATCCAGATATTCAAGATGAACTCCAAGCAATGTATCCACATGATCCACATATTTGTGAATTTACTCAAGTGCACCATATAAGTGAGTATCAAGTGTACCCTGCACATGAATATTATTCGAACAAAGATCCATCGTGGACTGTTAAAGGCTTAATCGAGACAAGCAGATGTATAGGATATGCATACATGAAGAGGAAACTGTTTACTGTGGGCACATCATTCATAATCCCGATGGGAGAGCGAGTGGTTTCACTTTTTACAGGACCTGTGCTAACATCAGAACCAGAAGTTTATTCAAGAGTCTTAAAAGACACCGATAGATTCATTATATTTGGATCTAGTGGATTTTGGAAATTGATGTCAAATGAGCTTGCTGCTAGAATTGTTAAACGCAGTCCACGAGATGATATCGCGAAAAGACTAGCCATAATTGCTATAGAGAAGGGGGCTGGTAAAAAGGGAAACAAGTACCGTGACATTGTCGGGCTTCCTAAGGGAGAAGAAGTTAGCGGGAATTGGGGTTTGGAACCTGGCAGATCTAGACCGATTTATCATGATGATATGACTGTGATTGTTGTATTTTTCGACAGAAGGCCAACTGGTGTGAGGCCGGAGATCAAATGTTATACTTGCAGTGATTTCGCAGATCAACCATCAGCGTTTACACATTTCTATAATAATATGAATGTGTGA 1266 0.3949 MKLFLKYQLFGIPFPFNKTYRVSTETFNADPLARSMNLERHYSGEFSMASVQSNKDLEDQNQVDVSHDALFVGIYDGFKGNSAALYIRRNIFRALLRRIELNDNHMTVNILREVVAEIENGFQDFARNIYEENHQEVKIGLVSSGCLICIIWKGILYLANVGNSRAVLGSIKGDRYKRLRVMQMVRDHSCENPDIQDELQAMYPHDPHICEFTQVHHISEYQVYPAHEYYSNKDPSWTVKGLIETSRCIGYAYMKRKLFTVGTSFIIPMGERVVSLFTGPVLTSEPEVYSRVLKDTDRFIIFGSSGFWKLMSNELAARIVKRSPRDDIAKRLAIIAIEKGAGKKGNKYRDIVGLPKGEEVSGNWGLEPGRSRPIYHDDMTVIVVFFDRRPTGVRPEIKCYTCSDFADQPSAFTHFYNNMNV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02469 421 SUPERFAMILY PP2C-like 41 388 IPR036457 -
Vifa5g02469 421 CDD PP2Cc 46 386 IPR001932 -
Vifa5g02469 421 ProSiteProfiles PPM-type phosphatase domain profile. 45 386 IPR001932 -
Vifa5g02469 421 Gene3D - 20 391 IPR036457 -
Vifa5g02469 421 SMART PP2C_4 39 384 IPR001932 -
Vifa5g02469 421 PANTHER PROTEIN PHOSPHATASE 43 384 IPR015655 GO:0004722|GO:0006470
Vifa5g02469 421 Pfam Protein phosphatase 2C 59 194 IPR001932 -
Vifa5g02469 421 Pfam Protein phosphatase 2C 237 342 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02469 Vifa-Chr5 817731195 817732708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02469 32 387 PP2C-type Phosphatase Gene Family AT5G06750 36.313 2.15e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02469 K01102 - psat:127131157 396.741