Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02468 ATGGGGCTGTTTCTAAAATATCTACTTTTCGGGGTCCTGTTCCCGTACAAAACTAATCGTGTCAGCACTGAAACTTTTAATGCTGACCCTTTAGCGAGGTCGATGAGACTGGAAAGGCATTACCGTGGCGAATTCTCCATAGCTGCAGTTCAGTCAAATAAGGATATGGAAGATCACAGCCATGTCGATGTTAGCCATGATGCAATCTTCGTTGGAATTTATGATGGCTTTAAAGGAAACACCGCTGCCACCTACATTCGTAGGCACATCTTTCAGGGTCTATTGAGGCGTATTATGGAGAATAATAACAATATGACTGTGGCTATTTTGAGGGAAGTTGTTGAGGAAATCGAAAGCGGATTTATGGAGTTTGCTAGAACTAGTTTTGAGCATCAACATCAGGAACATATAGCTTTAGTTAGTTCAGGTTGTTTGATTTGTTTTATATGGCGAGGGATAGTATATCTTGCCAATGTTGGAGACTCGCGCGCTATACTTTGTTCTGAGAAGGATGTTGGTCCGTTTAAAAGATTGCGTGTGAAGCAAATGGTTAGAGATCACAATTGTGATAATTCAGATATTCAAAAAGAACTCCGTAAGTTGCATCCAGATGATGAACCTATTTACGAATTTAGTGAACTGTATCACCCAGATGAGAATTATCATGCTAACAAAGATCCATCATGGACTATTAAAGGCTTAATCGAGACAAGCAGATGCATAGGATATGCATACTTGAAGAAGGTGCCGTTTACTCAAAGGAGTTCATTCCAAATCCCAATGCGAGAACGAGTGGTTTCAGCTTTTACAGGACCTGTGCTAAGATCAGAACCCGATGTTTATTCAAGAGACTTGAAAGACAGTGATATATTCATTATATTTGGATCTAGTGGATTTTGGAAATTAATGTCAAATGAGCTTGCTGCTAGAATTGTTCACACCAGTCCACGAGATGATATCGCGAAAAAACTAGCCATAATTGCTATAGAGAAGGGGGCTAGTAAAAGGGAAAGCAAATACAGTGACATTGTAGAGCTTCCTAAGGGAAATTGTGCTAGTGGGAATTGGGATATGGTACTTGACAGATCTAGACCGCTTTATCATGATGATATAACTGTGATTGTTGTGTTTTTCGACAAAAGGCCGAATGGTGTGAGGCCAGAGATCAAGTCTTACACTTGCAATGATTATGCAAATCTACCATCCGAGTTTATATATTTCTATAATAATATGAATGTGTGA 1242 0.3937 MGLFLKYLLFGVLFPYKTNRVSTETFNADPLARSMRLERHYRGEFSIAAVQSNKDMEDHSHVDVSHDAIFVGIYDGFKGNTAATYIRRHIFQGLLRRIMENNNNMTVAILREVVEEIESGFMEFARTSFEHQHQEHIALVSSGCLICFIWRGIVYLANVGDSRAILCSEKDVGPFKRLRVKQMVRDHNCDNSDIQKELRKLHPDDEPIYEFSELYHPDENYHANKDPSWTIKGLIETSRCIGYAYLKKVPFTQRSSFQIPMRERVVSAFTGPVLRSEPDVYSRDLKDSDIFIIFGSSGFWKLMSNELAARIVHTSPRDDIAKKLAIIAIEKGASKRESKYSDIVELPKGNCASGNWDMVLDRSRPLYHDDITVIVVFFDKRPNGVRPEIKSYTCNDYANLPSEFIYFYNNMNV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02468 413 ProSiteProfiles PPM-type phosphatase domain profile. 44 378 IPR001932 -
Vifa5g02468 413 Pfam Protein phosphatase 2C 63 334 IPR001932 -
Vifa5g02468 413 SMART PP2C_4 37 376 IPR001932 -
Vifa5g02468 413 CDD PP2Cc 45 378 IPR001932 -
Vifa5g02468 413 PANTHER PROTEIN PHOSPHATASE 42 376 IPR015655 GO:0004722|GO:0006470
Vifa5g02468 413 Gene3D - 19 383 IPR036457 -
Vifa5g02468 413 SUPERFAMILY PP2C-like 51 380 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02468 Vifa-Chr5 817652672 817654009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02468 31 379 PP2C-type Phosphatase Gene Family AT5G06750 38.857 6.30e-71 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02468 K01102 - psat:127131157 364.77