Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02464 ATGGAGAGAGTCCAATCCTCCTACGAATCTCAGGATGAACCGTTCGAAATTGGGAAAGAGATGTATCGTGGACAGCAGTACAGTCAAATTTACTACGCTCGTCTTCGATTGATGCGAACTCTCTTGTATTCCCTTGTTTCCCAATGGAAACCTAATTCTCCTGTGTGCACGGTGTTGGGACTTGAAGAGGGCAAAGAGTGTGTTGTAGTTGGGACACTGTTCAAAAACATGAAATTGAAACCTTGCATACTTGATGAGTATTCTAAAGAGAGATCAGTTGTCCCGCTTGTCAAGCCGCATAACTTTGTGGACAACGATGATTATCTTGTTTTGGAAGATGAAAGTGGAAGAGTTAAGCTTGGTGGGAATATAATTGTGCCATCTGTTTATGTAACAGGAATTGTGGTTGCTATACATGGTAAGGAGACTGGAGCCGGTGATTTTTTGGTTCAGGAAGTTCTAGAAGCTGGCTTACCCCCGCAGATAGAATTCCCCATTAAATCAAGGGAAGACAGATATGTTCTTCTTGTGTCAGGATTAAGTATTGGCAGCAGCAAGTCTAACCCTCTTCAATTTCAGCTTCTAGTTGATCATATTACTGGGCATTTAGGAGATGAGAAGGAGCAAAGTATTGCTTCGCAAATTGTTCATGTAGTCATTGCTGGAAATTCTGTTGAGATACCTCGTGGACTTCTTAATGGACAGAATTTGGCTTCAAAAGATCTCTCGAAGATGGCAGAACCAGTAAAGGAACTAGATATTCTGTTGAATCAGATTGCTGCGGGTTTGCCATTGGATATCATGCCAGGACCCTGTGACCCTGCTAATTTCTCATTACCACAACAGGCATTGCATAGATGCCTTTTCCCCGGGTCATCAGTTTACAACACTTTTAGATCTTGTACAAATCCTCATTGTTTTGAGCTTGATGGTATCAGGTTTCTCGGGACATCCGGTCAAAATGTAGATGATCTTGATAAGTATTCAGAGGCAAAAGATAAGCTTGACTTCATGGAAAGGACATTACGGTGGAGGCATTTGGCACCAACTGCACCTAATACCCTTGGTTGCTATCCTTATACTGATAGGGATCCTTTCTTCATTCAAAATTGTCCACATGTGTACTTTGTTGGCAATCAGGAAAAATATGATACTCGTGTGATAAAGGGATCAGAAGGCCAATCGGTTAGACTCATATGTGTTCCTAAATTCAGTGAAAATGGAGTTGCTGTTATGTTGAATCTGAGGGATCTTGAATGTCACACTCTCAGTTTTGGAACTCAGTTCAGCCAATAA 1296 0.4151 MERVQSSYESQDEPFEIGKEMYRGQQYSQIYYARLRLMRTLLYSLVSQWKPNSPVCTVLGLEEGKECVVVGTLFKNMKLKPCILDEYSKERSVVPLVKPHNFVDNDDYLVLEDESGRVKLGGNIIVPSVYVTGIVVAIHGKETGAGDFLVQEVLEAGLPPQIEFPIKSREDRYVLLVSGLSIGSSKSNPLQFQLLVDHITGHLGDEKEQSIASQIVHVVIAGNSVEIPRGLLNGQNLASKDLSKMAEPVKELDILLNQIAAGLPLDIMPGPCDPANFSLPQQALHRCLFPGSSVYNTFRSCTNPHCFELDGIRFLGTSGQNVDDLDKYSEAKDKLDFMERTLRWRHLAPTAPNTLGCYPYTDRDPFFIQNCPHVYFVGNQEKYDTRVIKGSEGQSVRLICVPKFSENGVAVMLNLRDLECHTLSFGTQFSQ 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02464 431 PANTHER DNA POLYMERASE DELTA SUBUNIT 2 3 425 IPR024826 -
Vifa5g02464 431 CDD MPP_PolD2_C 173 425 IPR041863 -
Vifa5g02464 431 FunFam DNA polymerase delta small subunit 156 431 - -
Vifa5g02464 431 Gene3D - 165 431 - -
Vifa5g02464 431 Pfam DNA polymerase alpha/epsilon subunit B 174 384 IPR007185 GO:0003677|GO:0006260
Vifa5g02464 431 FunFam DNA polymerase delta subunit 2 32 156 - -
Vifa5g02464 431 Pfam DNA polymerase delta subunit OB-fold domain 26 153 IPR040663 -
Vifa5g02464 431 Gene3D - 32 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02464 2 431 Core DNA Replication Machinery Family AT2G42120 76.512 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02464 K02328 - gmx:100780072 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02464 5 817076303 817081436 Vifa5g02464 5 817076303 817081436 ECH