Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02458 ATGGATGTCCGCAAGAGAGGTAGACCTGAACATGGATTTAACACCAATGGTGGATTCAAGAAATCCAGACAAGAAATGCAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGTTGCCCATTTGGTGAGACATGCCATTTCTTGCACTATGTTCCTGGTGGTTTTAATGCTGTTGCCCATATGATGAATCTAACACCCACAGCGCCTCCTGCACCCAGAAATGTTGCAGCCCCACCACATGCACATGCACCCAATGGATCCGCGCCCTCTGCTGTTAAAAGTCGCATATGCAACAGGTTTAACACCGCCGAAGGTTGCAAATTCGGCGACAAATGTCATTTTGCTCATGGTGAATGGGAACTTGGAAAACCTGTAGCTCTATCATTTGATGATCACCGTCACGCGGGACCCCCCAACGTAGGTCGTATGGGGGGTCATCGGATGGAGCCTCCTCCTGGTCCAACAACCAGCTTTGGTGCCACTGCCACTGCCAAGATCAGTGTGGAAGCTTCCATGGCTGGAGCAATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGCCAAACTGGGGCCAAGCTTTCGATTCGAGACCATGAATCTGATCAAAATCTTAGGAACATTGAACTTGAGGGAACTTTTGAACAAATTAAGGATGCAAGTAACATGGTGAAGGATTTACTGTTGACCTTGCAAATGTCTGCACCACCTAAAACAACCCAAGGTCCTCCTGGTGCCCCCGGCCATCATCATGGAAATCATGGAAGCAACTTTAAGACAAAATTGTGTGAGAATTTTACAAAAGGATCTTGTACTTTTGGAGAAAGATGTCATTTTGCACATGGAGCGGCTGAAATGAGGAAAAATTAA 903 0.464 MDVRKRGRPEHGFNTNGGFKKSRQEMQSLSTGVGSKSKPCTKFFSTSGCPFGETCHFLHYVPGGFNAVAHMMNLTPTAPPAPRNVAAPPHAHAPNGSAPSAVKSRICNRFNTAEGCKFGDKCHFAHGEWELGKPVALSFDDHRHAGPPNVGRMGGHRMEPPPGPTTSFGATATAKISVEASMAGAIIGKGGVNSKQICRQTGAKLSIRDHESDQNLRNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKTTQGPPGAPGHHHGNHGSNFKTKLCENFTKGSCTFGERCHFAHGAAEMRKN 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02458 300 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Vifa5g02458 300 MobiDBLite consensus disorder prediction 17 36 - -
Vifa5g02458 300 FunFam Zinc finger CCCH domain-containing protein 96 133 - -
Vifa5g02458 300 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Vifa5g02458 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Vifa5g02458 300 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 269 293 IPR000571 GO:0046872
Vifa5g02458 300 Gene3D - 265 300 - -
Vifa5g02458 300 Gene3D - 96 133 - -
Vifa5g02458 300 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 243 IPR036612 GO:0003723
Vifa5g02458 300 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Vifa5g02458 300 ProSiteProfiles Zinc finger C3H1-type profile. 268 295 IPR000571 GO:0046872
Vifa5g02458 300 MobiDBLite consensus disorder prediction 245 264 - -
Vifa5g02458 300 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 158 IPR045877 GO:0003729
Vifa5g02458 300 SMART kh_6 170 240 IPR004087 GO:0003676
Vifa5g02458 300 Gene3D K Homology domain, type 1 167 264 IPR036612 GO:0003723
Vifa5g02458 300 CDD KH-I_AtC3H36_like 174 239 - -
Vifa5g02458 300 MobiDBLite consensus disorder prediction 1 36 - -
Vifa5g02458 300 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Vifa5g02458 300 SUPERFAMILY CCCH zinc finger 267 298 IPR036855 GO:0046872
Vifa5g02458 300 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Vifa5g02458 300 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Vifa5g02458 300 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Vifa5g02458 300 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Vifa5g02458 300 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Vifa5g02458 300 MobiDBLite consensus disorder prediction 80 99 - -
Vifa5g02458 300 FunFam Zinc finger CCCH domain-containing protein 263 299 - -
Vifa5g02458 300 Pfam KH domain 174 236 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02458 Vifa-Chr5 813149436 813152227 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa5g02458 KH_1 2.1e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02458 - - gmx:100803981 480.715