Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02446 ATGAGAGAGGTTTGGAATATAGGAACACGCAGTCAACAACAAGAAGAAGAAAAATCATCTAATACAAACACTATTATGAGCCGTTTTGAGTCACCAACTTCTGCTTTTTATGCAACAGAAACCTGCATGGGTTTTGCAGAATTTGATAATAATCGATCTTTGAATACTCAACTACATAAGATCAATGATTTGGAGTACCCTTTATGTCAATCTTTAAGGGAAAACAATCAATTTTTGGATTCATCAAACCAATCTGATCCCAACTTTGAATTGTCAGATACTTTGCAAGCATTGGTCAAATCTCAATTGAATGGTAATCAATGTGTTAGATTACCAGAAAACCACTATAAGTTTTCTTGTGAAAATTTTCCCACGATCAAGCCTTTTCCATTTGAACATCAGAAGTTGTTTTTCGATGATCTTGCCTCGGTTAACAGAAGCTCATCATTTTGTAACAAAGGAAATCATGACTATACGGTTGCTTGCGGAACTTATCATTTATCTGTTGAGCAACTGAATTTCTCTTCTCAACATGATCAGAAGTTGTCTCCAACAATTTCATCAGCAAGTTTCTCGAATTCTCTTGGAAACACTTCTTCTAATGGAAACGTTGTCTCGAGTAAAACGAGAATTAGATGGACAAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTGAATCGCCTCGGTGGCGCAGACAAGGCAACACCAAAAGCTATATTGAAGATGATGGATTCTAAAGGTTTGACCATATTTCATGTGAAAAGTCATTTGCAGAAATATAGAACTGCAAAATTCATACCAGAGGCTTCAGGGAAATCTGACAAGAGAATCCATACAGAAGATCTGCATCACGTTGGTGTTAAAGCTGGCTATCAGATTAAGGAAGCACTTCAACTTCAATTAGAAGCACAAAGACGTCTTCATGAACAACTAGAGATTCAGAGAACATTACAATTGCGACTTGAGGAACAAGGCAAACAGCTGAAAAAGATGTTTGATCAGCAGCAGAAGACCTGTAACAACTTCTTCAATACTCCAACTACAATCAATGATGATGATGATGCGAAAATTGGTCAAAAAGATATTGAAGTTTCTACGTCTGAAGAGACTGAAAACTCATTATTTCCCTGTAAAACCTCTCCGAACACATAA 1152 0.3663 MREVWNIGTRSQQQEEEKSSNTNTIMSRFESPTSAFYATETCMGFAEFDNNRSLNTQLHKINDLEYPLCQSLRENNQFLDSSNQSDPNFELSDTLQALVKSQLNGNQCVRLPENHYKFSCENFPTIKPFPFEHQKLFFDDLASVNRSSSFCNKGNHDYTVACGTYHLSVEQLNFSSQHDQKLSPTISSASFSNSLGNTSSNGNVVSSKTRIRWTKDLHEKFVECVNRLGGADKATPKAILKMMDSKGLTIFHVKSHLQKYRTAKFIPEASGKSDKRIHTEDLHHVGVKAGYQIKEALQLQLEAQRRLHEQLEIQRTLQLRLEEQGKQLKKMFDQQQKTCNNFFNTPTTINDDDDAKIGQKDIEVSTSEETENSLFPCKTSPNT 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02446 383 MobiDBLite consensus disorder prediction 1 26 - -
Vifa5g02446 383 Coils Coil 294 314 - -
Vifa5g02446 383 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vifa5g02446 383 SUPERFAMILY Homeodomain-like 206 262 IPR009057 -
Vifa5g02446 383 Gene3D - 207 266 - -
Vifa5g02446 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 201 368 IPR044848 GO:0003700
Vifa5g02446 383 FunFam Myb family transcription factor 207 265 - -
Vifa5g02446 383 Pfam MYB-CC type transfactor, LHEQLE motif 292 338 IPR025756 -
Vifa5g02446 383 MobiDBLite consensus disorder prediction 362 383 - -
Vifa5g02446 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Vifa5g02446 383 MobiDBLite consensus disorder prediction 368 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02446 Vifa-Chr5 808257377 808260197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02446 195 369 G2-like Transcription Factor Family AT4G28610 50.562 7.72e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g02446 Myb_DNA-binding 3.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02446 - - cam:101504038 528.094