Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02444 ATGTACCAACACTGGTCAAGGATGTATGGAACACAATGGGAATCCTACATGGGAATCAACAACCTAGTTAAGGTTGTTGGATCTGAGCATGTGAGTTTTGAGCCAATCAAATCACCCTGCAACAACAACATTATCAGTTCCAATTTTCAAGGTGAAGAATACTATGATGAGGATGAGATTGAAGTTCCTGATTGGTGTTTTGATAACTTCCCAAAGATAACAGATCCTCCATTGCTGAATTGTCAAGCCTCTGGAGATAACTTCACTGCTTCTCAGCTCACAAACTCCTTATATTCTATTGATGAATCTTTGGTGTCTAATACTGCTGATAGTCATAATTCTTCCGAAGAAGAATATAGTAATTTTCAGTCTGGGAAGTTGTCATTTTATAATCACTTTCCACAAAACCATGATGAATTGATGAAGAATGATGCTTTCTTAGATGAGAAGAAGCCCCTTGAAATTTATTTTCAGAGAACTGAGTCAGGGTCATGTACAAAGTCACAAAAGCATACTCCTCAACTTTATGGAACTACCTGTGTCACTTCTAGCAACTCTGGTTCAAGAAAAGCTCTAACAAGTAACAGAAGAATAAGATGGACAGAAGAACTGCATGAATCATTCATGATGATAGTTGATCAACTGGGTGGCCCAGAAAAAGCAAAGCCTAAGGCTATACTAGATATGATGAAATCAAAATTGCTATCACTTTCTCATGTTAAAAGTCATTTGCAGAAATGTAGGTCTACAATACGCTTACATAAAGCTTTGCAGGAAAGATCTGAGGAAGGATTTAGAACAGATAGAGTCACAGAGCTTCAACACAAAGTCAGGCTTATGCAAATCGAGGAATCGCAGAAGTTGCAACTAGAGGTTCGAAAAAGTATTTCCCAACAGCTAGAGATGCAAAGAAATTTGCAAGCACTAATTGAAGAACATAGCAAGAAGCTCAAGCTAATGCAAAAAGAAAAAACCAACCAAAGAATATCCTTGACACAACCAGAAGCCAAGGTCAACCTAGAAAACCCGAGGGATGATCTGAAGGCAAGGATTGAAGTGTTTGAAGCTCGAGTGGTTGCTCAAGTAGAGTATGTCAGAGTTGTTGTTGATCACCCGAGTAGAACTAATGATATTCTTAATATTGGTCCTTATGATGTTGAAATTGATCCTTCTATTCCAATTCCTGATGACAATCTTGCTCTTGTTGATATTCCTCCATCTGATGTTGATGCATTTCCATGA 1242 0.38 MYQHWSRMYGTQWESYMGINNLVKVVGSEHVSFEPIKSPCNNNIISSNFQGEEYYDEDEIEVPDWCFDNFPKITDPPLLNCQASGDNFTASQLTNSLYSIDESLVSNTADSHNSSEEEYSNFQSGKLSFYNHFPQNHDELMKNDAFLDEKKPLEIYFQRTESGSCTKSQKHTPQLYGTTCVTSSNSGSRKALTSNRRIRWTEELHESFMMIVDQLGGPEKAKPKAILDMMKSKLLSLSHVKSHLQKCRSTIRLHKALQERSEEGFRTDRVTELQHKVRLMQIEESQKLQLEVRKSISQQLEMQRNLQALIEEHSKKLKLMQKEKTNQRISLTQPEAKVNLENPRDDLKARIEVFEARVVAQVEYVRVVVDHPSRTNDILNIGPYDVEIDPSIPIPDDNLALVDIPPSDVDAFP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02444 413 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 180 342 IPR044848 GO:0003700
Vifa5g02444 413 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 249 IPR006447 GO:0003677
Vifa5g02444 413 Coils Coil 303 323 - -
Vifa5g02444 413 Gene3D - 195 251 - -
Vifa5g02444 413 SUPERFAMILY Homeodomain-like 194 251 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02444 Vifa-Chr5 807403723 807407295 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02444 178 320 G2-like Transcription Factor Family AT4G28610 43.919 7.46e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa5g02444 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02444 - - psat:127126241 622.468