Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02443 ATGCTCCACTTAAGAAAACTCAGATTAACATTTTCATTCTTCAACCTTAAACCCTCCCTAAACCCTAGATTTCACAGCACAACAAAAACATCACTTCAAATTCAATCACACCCAAAACCCAAAATTCCCTCAAAATCCACAATCAAAGAAGCCCAATCCGCATTACTAGACTATCTCCATTCCACAAGAAGCTTGCAGTTTCTAGACGCCGACAACATGTGCAAAAACTCACCTTTTTTCATTCAAACCCTCGTCGAAAAAACCCTAAAAAACGAAAAACTCGTAAACCCTAAGAGATTAATTTCTCGCTATCTCCGTTACCATCCAATCAACGAATTCGAACCGTTTTTCGAGAGTTTGGGTTTGAAGCCTTCAGAATATGCACCTCTTCTTCCGCGTGACTTGATTTTTCTCAATGATGATCCTGTTATGATGGAGAATTATCATACTCTCTGTAACTATGGGGTTCCGAGGTCCAAAATGGGGAAGATTTTCAAGCAAGCGCCGGAGGTTTTTAGATTTGAAAATGGGGTTTTGGGTTTGAAGATTAAGGGTTATGAGAAGATGGGTGTTTCTTATGCGGTTTTAGTGAATGCTGTTGCGGTTAGTCCTGGGATTTTGGTTGGTGATGTTAATGATGATTTTGTTGAGGTTGTGGATATGTTGAAAGATGTTGTTGCAAAGGGTGGTGATGTTGACAGTGGTTGGATTAAGTGGCAGTTTTTGGATGAGGGTTCTTGTAATTGGGGCTTGATGCGTGAGCTCTTGTGTTTGCTTTCGGATGCTGGTTTGAGTAAGGAAGAGCTGGCTGAGATTATTCGATGTAGTCCTTGTATTGTTTTTGAGGAATCGGGAGGTAGGACGCTCTCTATGATTGGGTTTTTGACTAAATTTGGATTGTCTGTGAACCAGATTGCCCTTGTGTTTCTTGAGTTTCCGCAGATTCGGATGGTTAAGTTTTTAGCTAACTTGAGAATGTGTTTTCAGTTTCTGGCTGAAATTGACATGGAAGCTGCAGAGATTGGAAAGATTTTCCAGTCTCACACATTGTTTATTGGCTCCTATACTCTCAAGACAACAAAGAGTTTGCTTGGTTGTTTGAATGTCGGCAAGAAGCGTCTTTCTGCCATAGTGCAGGAGAATCCTCATGAAATGAAGAATTGGATTCTGGGAAGGAGAGTTAAGCCTTTGGTTAGCATAAGGGAGGAGGAAGAGGAAAAATCAAAGGCGGGGAAGACAGAGTTCTTGCTGCGGTTAGGATATGTGGAAAATTCGAAACAAATGAATACGGCATTTAAGATGTTCAGAGGTAAGGGAGCTGAACTTCAGGAGAGATTTGATTTTATTGTTAGTGCTGGCTTGACACGCGACGATGTTTGTAGTATGATTAGAGTTTCACCGCAGATTCTTAATCAGACCACAGATAGGGTCAAGATGAAAATCGAGTTTCTTAAAAAGATAGGATATTCTGTATCAGATTTAGTGAGTTTTCCATCTTATCTTTCATATAAATCTCTAAGAGTTAAACGTAGGTTGTCAATGTATTACTGGCTTATAGACAATGGGGCCGTAGAGCCCGGGCTTGCTTTGAGCACCATTATTGCATGCACAGACAGAATATTCTTACAAAGTTATGTGAATCGCCATCCCTCTGGCCTTCAAGTTTGGGAAGATTTGCAGAAAGAAATTCATTCTGAAGATTAA 1704 0.4032 MLHLRKLRLTFSFFNLKPSLNPRFHSTTKTSLQIQSHPKPKIPSKSTIKEAQSALLDYLHSTRSLQFLDADNMCKNSPFFIQTLVEKTLKNEKLVNPKRLISRYLRYHPINEFEPFFESLGLKPSEYAPLLPRDLIFLNDDPVMMENYHTLCNYGVPRSKMGKIFKQAPEVFRFENGVLGLKIKGYEKMGVSYAVLVNAVAVSPGILVGDVNDDFVEVVDMLKDVVAKGGDVDSGWIKWQFLDEGSCNWGLMRELLCLLSDAGLSKEELAEIIRCSPCIVFEESGGRTLSMIGFLTKFGLSVNQIALVFLEFPQIRMVKFLANLRMCFQFLAEIDMEAAEIGKIFQSHTLFIGSYTLKTTKSLLGCLNVGKKRLSAIVQENPHEMKNWILGRRVKPLVSIREEEEEKSKAGKTEFLLRLGYVENSKQMNTAFKMFRGKGAELQERFDFIVSAGLTRDDVCSMIRVSPQILNQTTDRVKMKIEFLKKIGYSVSDLVSFPSYLSYKSLRVKRRLSMYYWLIDNGAVEPGLALSTIIACTDRIFLQSYVNRHPSGLQVWEDLQKEIHSED 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02443 567 PANTHER CGI-12 PROTEIN-RELATED 255 549 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 Pfam mTERF 432 541 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 Pfam mTERF 151 354 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 Pfam mTERF 257 420 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 Gene3D Transcription termination factor 3, mitochondrial 287 560 IPR038538 -
Vifa5g02443 567 Gene3D Transcription termination factor 3, mitochondrial 75 228 IPR038538 -
Vifa5g02443 567 FunFam Transcription termination factor MTEF18, mitochondrial 291 559 - -
Vifa5g02443 567 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 SMART mt_12 460 490 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 SMART mt_12 162 192 IPR003690 GO:0003690|GO:0006355
Vifa5g02443 567 SMART mt_12 306 337 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02443 Vifa-Chr5 807107378 807109081 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vifa5g02443 mTERF 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02443 - - tpra:123891547 784.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02443 5 807107378 807109081 Vifa5g02443 5 807107378 807109081 ECH