Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02440 ATGGATTCAGAAAACTCTTCTTCAGAAGAGTCCTCTCTCAATGGCTTGAAATTTGGCCAACGTATCTATTTTGAGGATACATCTCTTGCAAACTCCTCCACTGCTAATGCTAATGTTTCTTCTGGTTCTAGTGGCTCTAAGAAAGGAAGAGGTGGTTCAGTTCAACACTCTCAACCTCCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGATGCTAAAGCTTACTATTCAAGACACAAAGTTTGTAGCATGCACTCTAAATCACCTACTGTTACTGTTTCTGGTCTACAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGACGACTAGCTGGTCATAATGAGCGTCGCAGAAAGCCCCCACCCAGTTCTCTCTTAACCTCACATTTTACGGGATTTTCTTCATCTGTTTTTGATAACAGCGGCGGAGGTGGCAGCTTCCTGATGGAATTTGCTCCACACCCGAAACTCAGTCTGAGGAATTCACTTCCATCATCTGGAAATCAAACCACAACACTCGGTTGGCCTTGGCCGGGAAACTCAGAGTCGCCATCTGACAACTTTTTCTTGGAAGGTTCGGTAGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTTCTGATGAAAGTTACACCGGAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTAGAAACACAGAACCAAGTCTTGGATTGAATAGCATGCTGAATTTCAATGAGACACCCATGACACAACTTGCTACATCTTCTCATGGTGTAGCCATGCATCAACTTCCAAACACTTCATGTTATTTCAAGGACATTGATGCTAGTAACATTTCGCACGAGGCTGTCCCCGATCTTGGTCCTGGTCATATGTCACAGCCTCTCGATAGCCAACTTCATGGTGATCTTGATCTGTCGCAGCAAGGAAGGAGGCATTATATGGATGTAGAACACTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTAA 1044 0.4464 MDSENSSSEESSLNGLKFGQRIYFEDTSLANSSTANANVSSGSSGSKKGRGGSVQHSQPPRCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSHFTGFSSSVFDNSGGGGSFLMEFAPHPKLSLRNSLPSSGNQTTTLGWPWPGNSESPSDNFFLEGSVGGTSFPGARHPSDESYTGVTDSSCALSLLSNQTWGSRNTEPSLGLNSMLNFNETPMTQLATSSHGVAMHQLPNTSCYFKDIDASNISHEAVPDLGPGHMSQPLDSQLHGDLDLSQQGRRHYMDVEHSRAYESSQWSL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02440 347 FunFam Squamosa promoter-binding-like protein 14 53 123 - -
Vifa5g02440 347 Pfam SBP domain 62 135 IPR004333 GO:0003677
Vifa5g02440 347 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
Vifa5g02440 347 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 319 IPR044817 GO:0003677
Vifa5g02440 347 MobiDBLite consensus disorder prediction 202 226 - -
Vifa5g02440 347 MobiDBLite consensus disorder prediction 33 60 - -
Vifa5g02440 347 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Vifa5g02440 347 MobiDBLite consensus disorder prediction 298 319 - -
Vifa5g02440 347 MobiDBLite consensus disorder prediction 33 61 - -
Vifa5g02440 347 SUPERFAMILY SBT domain 60 141 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02440 Vifa-Chr5 806763792 806765969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02440 16 347 SBP-box Gene Family AT2G42200 41.910 1.89e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa5g02440 SBP 7.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02440 - - mtr:11430800 536.569