LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa5g02439	ATGATTCGCAACTTCCTTTACATCCTTCTCAATCTCGTTCTCTTTTCTTCAATTTTGATTTCTCAGAGCTTGGCGTTAACTCGTCCACCAGAAGTGTGGGTTCTACGAGATCTATACCAGGCCTTGAACTACTCGAATGCGCTCCGTGGATGGAATGGCAGTGATCCTTGCGGGGAGTCTTGGACGGGTGTTACTTGTTCTGGTTCATCAGTTATACGCCTACAGATTCAAGGGTTAAACCTTACTGGGAGTCTATGCAGGCTCTATCTTCTACGGAATTTGAAGAAGCTTGATGTCAGTTCAAATAACATAGTGGGCGAAATGCCATTTGGTTTACCCCCCAGTGTCACTCATATGAATTTAAGCCACAATTTCTTAATTGGACCTATTGGCGACGTATTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTTTCGGAAGATCTACCAAGATCATTTGGCTCCCTGACAAACCTTGCTAGATTGTTCTTGCAGAATAACAGATTCACTGGATCAGTCACCTACCTGGCGGAACTTCCACTTACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCCTTCTTCCACATCAATTTCAGAATATAAAAAAATTATGGATTGGTGGGAATAAATTCCATGCAGCGGACAACTATCCCCCATTGACTTCTCCTGTGGGGACATTATCAGTTGAGCACAATATTAGTCGCCCGCCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAGAGTACTTGAGCACAAGCATAAGATGAAAAAGTTAGGCCCTGGAGGAATTGCTTTTATTGTTGCTGGAGGAACAGTAATGGCTACAGGTGTGGCACTCCTCATTGCAATCCGGTTAAACAAACTGCATGCTCAAAGCCGGAACTTGAATTACTCAGAAAGCAATGATATCTCTTTGCATTCTCATCCAACCAGTGCAAGCATAGAGGTGTCTTCTGCTGAACTAGATGACAAGCCACTACTCCTGCCTATTAACGCTGCATCTCTTTTGGGTCCAATGAAATTTCCTTTCCTGCACCATAACAATATAGAGGAAACATCAAGAAGAAGTTATTCCAAAAGAGGCAGATCCACTAGAAGGACAAAAATCTATACCATTGCAGAGCTTCAGCTGGCTACTAACTTCTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTTCTGATGGCAAAATTTTGGCCGTGAAGATCATAAACATGGCTGGTTTGTCTTACAGAGAAGAGGAAATGTTCTTGGATGTCATTTGCACAGCTTCCAAACTGAAGCACCCCAACATCATACCACTCAATGGTTACTGTTTGGAGCATGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTATATGATGCTCTTCATAGTGGAGCATGTGAAACACTATCGTGGACCCAGCGTCTTCGAATTGCTCTATATGTTGCTCGGGCTTTGGACTATTTGCACTCAGCATGCTGCCCGCCTGTGGCCCATGGTAATTTGAAGTCTGCCAACGTTCTACTGGATGAAAATTTGCTGCCTCGTGTTTGTGACAGTAGCTTGGCTATTTTGAGACCACTGACGAAGGTTCTAGCAGCTAAAGCAACTGAGACTACAATTTCAGAGAGAGGCTACGCTCCATCTGACCATGGCCAAACAGGGTTCAGCAGAAGAAGAGATGTCTTTGCCTTCGGAGTATTGCTTCTGGAATTGTTAACAGGAAGGAAACCTTTCGATGGTGCCAGGCCAAGGGAAGAGCAATATCTGGCAAAATGGGCTTCCCCCAGGCTTCGTGACAGCGCGAGTTTGGAACAGATAGTAGATCCCAGTATGAAAACAACAATTTCATTCAAGGCTCTTTCTTGTTATGCTGATCTCATCTCCCTCTGTATACAGCCTTCAAAACAACTCCGTCCCCAAATGTCTGAAGTTGTGAACTCTCTTGTATCTTTATACCAAAAGTTCAACTTTGCAAAGACCAGTGTAGCAGACGGTACTGATCTATTTGAGAAGTCTCTCCAATCAGCCGACACACGCTTTAAAAGTTCGCCAACATTTAGTCATCTATCAGCTTGA	2130	0.43	MIRNFLYILLNLVLFSSILISQSLALTRPPEVWVLRDLYQALNYSNALRGWNGSDPCGESWTGVTCSGSSVIRLQIQGLNLTGSLCRLYLLRNLKKLDVSSNNIVGEMPFGLPPSVTHMNLSHNFLIGPIGDVFTGLDNLKEMDLSYNNFSEDLPRSFGSLTNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGLLPHQFQNIKKLWIGGNKFHAADNYPPLTSPVGTLSVEHNISRPPTTNTNAIKNYAPPRVLEHKHKMKKLGPGGIAFIVAGGTVMATGVALLIAIRLNKLHAQSRNLNYSESNDISLHSHPTSASIEVSSAELDDKPLLLPINAASLLGPMKFPFLHHNNIEETSRRSYSKRGRSTRRTKIYTIAELQLATNFFNEGNLLGEGSLGPVYKAKFSDGKILAVKIINMAGLSYREEEMFLDVICTASKLKHPNIIPLNGYCLEHGEHLLVYDYFGNLTLYDALHSGACETLSWTQRLRIALYVARALDYLHSACCPPVAHGNLKSANVLLDENLLPRVCDSSLAILRPLTKVLAAKATETTISERGYAPSDHGQTGFSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLAKWASPRLRDSASLEQIVDPSMKTTISFKALSCYADLISLCIQPSKQLRPQMSEVVNSLVSLYQKFNFAKTSVADGTDLFEKSLQSADTRFKSSPTFSHLSA	709

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa5g02439	709	FunFam	Leucine-rich repeat receptor-like protein kinase	470	677	-	-
Vifa5g02439	709	Pfam	Leucine rich repeat N-terminal domain	34	67	IPR013210	-
Vifa5g02439	709	FunFam	Protein STRUBBELIG-RECEPTOR FAMILY 8	357	469	-	-
Vifa5g02439	709	Gene3D	Transferase(Phosphotransferase) domain 1	471	691	-	-
Vifa5g02439	709	SUPERFAMILY	Protein kinase-like (PK-like)	366	666	IPR011009	-
Vifa5g02439	709	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	17	668	IPR046959	-
Vifa5g02439	709	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 3	115	228	-	-
Vifa5g02439	709	Gene3D	Ribonuclease Inhibitor	28	260	IPR032675	-
Vifa5g02439	709	Pfam	Leucine rich repeat	114	174	IPR001611	GO:0005515
Vifa5g02439	709	Pfam	Protein tyrosine and serine/threonine kinase	395	666	IPR001245	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa5g02439	Vifa-Chr5	806251536	806256379	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa5g02439	9	709	Strubbelig Receptor Gene Family	AT5G06820	48.982	0.0	608

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-V	Vifa5g02439		PK_Tyr_Ser-Thr	1.5e-30	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa5g02439	-		-	mtr:11428201	1074.31

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