Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02439 ATGATTCGCAACTTCCTTTACATCCTTCTCAATCTCGTTCTCTTTTCTTCAATTTTGATTTCTCAGAGCTTGGCGTTAACTCGTCCACCAGAAGTGTGGGTTCTACGAGATCTATACCAGGCCTTGAACTACTCGAATGCGCTCCGTGGATGGAATGGCAGTGATCCTTGCGGGGAGTCTTGGACGGGTGTTACTTGTTCTGGTTCATCAGTTATACGCCTACAGATTCAAGGGTTAAACCTTACTGGGAGTCTATGCAGGCTCTATCTTCTACGGAATTTGAAGAAGCTTGATGTCAGTTCAAATAACATAGTGGGCGAAATGCCATTTGGTTTACCCCCCAGTGTCACTCATATGAATTTAAGCCACAATTTCTTAATTGGACCTATTGGCGACGTATTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTTTCGGAAGATCTACCAAGATCATTTGGCTCCCTGACAAACCTTGCTAGATTGTTCTTGCAGAATAACAGATTCACTGGATCAGTCACCTACCTGGCGGAACTTCCACTTACAGATTTGAACATTCAAGATAATCTGTTTAGTGGCCTTCTTCCACATCAATTTCAGAATATAAAAAAATTATGGATTGGTGGGAATAAATTCCATGCAGCGGACAACTATCCCCCATTGACTTCTCCTGTGGGGACATTATCAGTTGAGCACAATATTAGTCGCCCGCCCACAACTAATACAAATGCCATCAAGAACTATGCTCCTCCCAGAGTACTTGAGCACAAGCATAAGATGAAAAAGTTAGGCCCTGGAGGAATTGCTTTTATTGTTGCTGGAGGAACAGTAATGGCTACAGGTGTGGCACTCCTCATTGCAATCCGGTTAAACAAACTGCATGCTCAAAGCCGGAACTTGAATTACTCAGAAAGCAATGATATCTCTTTGCATTCTCATCCAACCAGTGCAAGCATAGAGGTGTCTTCTGCTGAACTAGATGACAAGCCACTACTCCTGCCTATTAACGCTGCATCTCTTTTGGGTCCAATGAAATTTCCTTTCCTGCACCATAACAATATAGAGGAAACATCAAGAAGAAGTTATTCCAAAAGAGGCAGATCCACTAGAAGGACAAAAATCTATACCATTGCAGAGCTTCAGCTGGCTACTAACTTCTTCAATGAAGGCAACCTTCTGGGAGAGGGATCTCTTGGTCCTGTTTACAAAGCTAAATTTTCTGATGGCAAAATTTTGGCCGTGAAGATCATAAACATGGCTGGTTTGTCTTACAGAGAAGAGGAAATGTTCTTGGATGTCATTTGCACAGCTTCCAAACTGAAGCACCCCAACATCATACCACTCAATGGTTACTGTTTGGAGCATGGAGAGCATCTTCTTGTTTATGATTACTTTGGAAATTTAACTCTATATGATGCTCTTCATAGTGGAGCATGTGAAACACTATCGTGGACCCAGCGTCTTCGAATTGCTCTATATGTTGCTCGGGCTTTGGACTATTTGCACTCAGCATGCTGCCCGCCTGTGGCCCATGGTAATTTGAAGTCTGCCAACGTTCTACTGGATGAAAATTTGCTGCCTCGTGTTTGTGACAGTAGCTTGGCTATTTTGAGACCACTGACGAAGGTTCTAGCAGCTAAAGCAACTGAGACTACAATTTCAGAGAGAGGCTACGCTCCATCTGACCATGGCCAAACAGGGTTCAGCAGAAGAAGAGATGTCTTTGCCTTCGGAGTATTGCTTCTGGAATTGTTAACAGGAAGGAAACCTTTCGATGGTGCCAGGCCAAGGGAAGAGCAATATCTGGCAAAATGGGCTTCCCCCAGGCTTCGTGACAGCGCGAGTTTGGAACAGATAGTAGATCCCAGTATGAAAACAACAATTTCATTCAAGGCTCTTTCTTGTTATGCTGATCTCATCTCCCTCTGTATACAGCCTTCAAAACAACTCCGTCCCCAAATGTCTGAAGTTGTGAACTCTCTTGTATCTTTATACCAAAAGTTCAACTTTGCAAAGACCAGTGTAGCAGACGGTACTGATCTATTTGAGAAGTCTCTCCAATCAGCCGACACACGCTTTAAAAGTTCGCCAACATTTAGTCATCTATCAGCTTGA 2130 0.43 MIRNFLYILLNLVLFSSILISQSLALTRPPEVWVLRDLYQALNYSNALRGWNGSDPCGESWTGVTCSGSSVIRLQIQGLNLTGSLCRLYLLRNLKKLDVSSNNIVGEMPFGLPPSVTHMNLSHNFLIGPIGDVFTGLDNLKEMDLSYNNFSEDLPRSFGSLTNLARLFLQNNRFTGSVTYLAELPLTDLNIQDNLFSGLLPHQFQNIKKLWIGGNKFHAADNYPPLTSPVGTLSVEHNISRPPTTNTNAIKNYAPPRVLEHKHKMKKLGPGGIAFIVAGGTVMATGVALLIAIRLNKLHAQSRNLNYSESNDISLHSHPTSASIEVSSAELDDKPLLLPINAASLLGPMKFPFLHHNNIEETSRRSYSKRGRSTRRTKIYTIAELQLATNFFNEGNLLGEGSLGPVYKAKFSDGKILAVKIINMAGLSYREEEMFLDVICTASKLKHPNIIPLNGYCLEHGEHLLVYDYFGNLTLYDALHSGACETLSWTQRLRIALYVARALDYLHSACCPPVAHGNLKSANVLLDENLLPRVCDSSLAILRPLTKVLAAKATETTISERGYAPSDHGQTGFSRRRDVFAFGVLLLELLTGRKPFDGARPREEQYLAKWASPRLRDSASLEQIVDPSMKTTISFKALSCYADLISLCIQPSKQLRPQMSEVVNSLVSLYQKFNFAKTSVADGTDLFEKSLQSADTRFKSSPTFSHLSA 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02439 709 FunFam Leucine-rich repeat receptor-like protein kinase 470 677 - -
Vifa5g02439 709 Pfam Leucine rich repeat N-terminal domain 34 67 IPR013210 -
Vifa5g02439 709 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 357 469 - -
Vifa5g02439 709 Gene3D Transferase(Phosphotransferase) domain 1 471 691 - -
Vifa5g02439 709 SUPERFAMILY Protein kinase-like (PK-like) 366 666 IPR011009 -
Vifa5g02439 709 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 668 IPR046959 -
Vifa5g02439 709 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 115 228 - -
Vifa5g02439 709 Gene3D Ribonuclease Inhibitor 28 260 IPR032675 -
Vifa5g02439 709 Pfam Leucine rich repeat 114 174 IPR001611 GO:0005515
Vifa5g02439 709 Pfam Protein tyrosine and serine/threonine kinase 395 666 IPR001245 GO:0004672|GO:0006468
Vifa5g02439 709 SUPERFAMILY L domain-like 45 219 - -
Vifa5g02439 709 Gene3D Phosphorylase Kinase; domain 1 355 469 - -
Vifa5g02439 709 ProSiteProfiles Protein kinase domain profile. 392 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g02439 Vifa-Chr5 806251536 806256379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02439 9 709 Strubbelig Receptor Gene Family AT5G06820 48.982 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Vifa5g02439 PK_Tyr_Ser-Thr 1.5e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02439 - - mtr:11428201 1074.31